Re: Fwd: Bug#692332: ITP: sga -- A de novo genome assembler based on the concept of string graphs. The major goal of SGA is to be very memory efficient, which is achieved by using a compressed representation of DNA sequence reads.
Hi,
On Thu, Nov 08, 2012 at 01:19:24AM -0700, Michael Crusoe wrote:
> I forgot the have the list own this when I sent this ITP out.
Thanks for the foreward (but you are watched anyway and I'm reading all
ITPs to debian-devel@l.d.o and all commits in our commits mailing list
;-))
> The packags is at git://git.debian.org/debian-med/sga.git with
> upstream in master and the package in debian.
>
> Feedback is welcome.
Just done.
> What is the next step to get bamtools and sga into Debian \ BioLinux \
> Ubuntu etc..?
I can tell for sure only for Debian:
1. Finalise last issues for bamtools (see my other mail)
2. I (or somebody else of the team) will sponsor the package to
the Debian mirrors
3. Wait until ftpmaster accepts the package (might last for two
days to two weeks depending on their manpower in the times of
freeze - hopefully not longer sometimes this might turn out
as a bottleneck but usually these guys are quite fast)
4. Once the package is in unstable it needs to stay there for
10 days without any RC bug and then it migrates to testing -
currently we are in freeze time and so it needs to wait until
Debian Wheezy is released (hint to everybody: please go and
fix remaining RC bugs even if we do not have any such in our
team maintained packages)
5. Provided that bemtools will not show any RC bugs it will be
part of Debian Wheezy+1
Regarding Ubuntu: It starts after item 3. when Ubuntu drains from
unstable (I personally have no idea at which point in time this will
happen).
Regarding BioLinux: I do not know how Tim is managing this and whether
he will wait in any case for an Ubuntu inclusion or whether he might
draw the package directly from Debian (unstable ?).
Hope this helps
Andreas.
--
http://fam-tille.de
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