Re: Java help for beast needed
Le 6/5/12 4:56 PM, Andreas Tille a écrit :
> Hi,
>
> after now having all preconditions for beast packaged in Debian upstream
> had release a new version meanwhile. I was quite optimistic but now I
> was running into Java detail problems:
>
> compile-all:
> [mkdir] Created dir: /home/tillea/debian-maintain/repack/beast/beast-mcmc-1.7.2/build
> [javac] /home/tillea/debian-maintain/repack/beast/beast-mcmc-1.7.2/build.xml:67: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
> [javac] Compiling 1875 source files to /home/tillea/debian-maintain/repack/beast/beast-mcmc-1.7.2/build
> [javac] /home/tillea/debian-maintain/repack/beast/beast-mcmc-1.7.2/src/dr/app/beagle/evomodel/sitemodel/EpochBranchSubstitutionModel.java:463: cannot find symbol
> [javac] symbol : method convolveTransitionMatrices(int[],int[],int[],int)
> [javac] location: interface beagle.Beagle
> [javac] beagle.convolveTransitionMatrices(firstConvolutionBuffers, // A
> [javac] ^
> [javac] Note: Some input files use or override a deprecated API.
> [javac] Note: Recompile with -Xlint:deprecation for details.
> [javac] Note: Some input files use unchecked or unsafe operations.
> [javac] Note: Recompile with -Xlint:unchecked for details.
> [javac] 1 error
>
>
> Any idea?
I will try to have a look but method
convolveTransitionMatrices
is not found in package beagle.Beagle
> (You can get the upstream source tarball via
>
> uscan --verbose --force-depends
>
> )
>
> Kind regards
>
> Andreas.
>
--
Olivier Sallou
IRISA / University of Rennes 1
Campus de Beaulieu, 35000 RENNES - FRANCE
Tel: 02.99.84.71.95
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