Re: Plans for ITK version 4
Hi all,
I have verified the failures linking against the system version of
FFTW on an i386 sid virtual machine, but the failures do not occur
when building FFTW 3.2.2 or 3.3 as a CMake ExternalProject.
Matt
On Mon, Apr 23, 2012 at 9:11 AM, Yaroslav Halchenko <yoh@debian.org> wrote:
> meanwhile I will blindly try to build/test it against fftw3 in
> experimental -- who knows, may be it is their bug ;)
>
> On Mon, 23 Apr 2012, Steve M. Robbins wrote:
>
>> I just ran "ITKFFTTestDriver itkFFTWF_FFTTest" through valgrind with
>> the following results. Any ideas of what to look at next are welcomed.
>
>> Thanks,
>> -Steve
>
>> PlanRigor: FFTW_EXHAUSTIVE (8)
>> ==13128== Invalid read of size 4
>> ==13128== at 0x730FA07: fftwf_execute (in /usr/lib/libfftw3f.so.3.3.0)
>> ==13128== by 0x82006E6: itk::FFTWForwardFFTImageFilter<itk::Image<float, 1u>, itk::Image<std::complex<float>, 1u> >::GenerateData() (in /home/steve/Packages/debian-med/trunk/packages/insighttoolkit/build-area/insighttoolkit4-4.1.0/BUILD/bin/ITKFFTTestDriver)
>> ==13128== by 0x4947378: itk::ProcessObject::UpdateOutputData(itk::DataObject*) (in /home/steve/Packages/debian-med/trunk/packages/insighttoolkit/build-area/insighttoolkit4-4.1.0/BUILD/lib/libITKCommon-4.1.so.1)
>> ==13128== by 0x4952DC2: itk::DataObject::UpdateOutputData() (in /home/steve/Packages/debian-med/trunk/packages/insighttoolkit/build-area/insighttoolkit4-4.1.0/BUILD/lib/libITKCommon-4.1.so.1)
>> ==13128== by 0x4952CFF: itk::DataObject::Update() (in /home/steve/Packages/debian-med/trunk/packages/insighttoolkit/build-area/insighttoolkit4-4.1.0/BUILD/lib/libITKCommon-4.1.so.1)
>> ==13128== by 0x49436C5: itk::ProcessObject::Update() (in /home/steve/Packages/debian-med/trunk/packages/insighttoolkit/build-area/insighttoolkit4-4.1.0/BUILD/lib/libITKCommon-4.1.so.1)
>> ==13128== by 0x81FD526: int test_fft<float, 1u, itk::FFTWForwardFFTImageFilter<itk::Image<float, 1u>, itk::Image<std::complex<float>, 1u> >, itk::FFTWInverseFFTImageFilter<itk::Image<std::complex<float>, 1u>, itk::Image<float, 1u> > >(unsigned int*) (in /home/steve/Packages/debian-med/trunk/packages/insighttoolkit/build-area/insighttoolkit4-4.1.0/BUILD/bin/ITKFFTTestDriver)
>> ==13128== by 0x81F69C6: itkFFTWF_FFTTest(int, char**) (in /home/steve/Packages/debian-med/trunk/packages/insighttoolkit/build-area/insighttoolkit4-4.1.0/BUILD/bin/ITKFFTTestDriver)
>> ==13128== by 0x9370E15: (below main) (libc-start.c:228)
>> ==13128== Address 0x0 is not stack'd, malloc'd or (recently) free'd
>> ==13128==
>> ==13128==
>> ==13128== Process terminating with default action of signal 11 (SIGSEGV): dumping core
>> ==13128== Access not within mapped region at address 0x0
>> ==13128== at 0x730FA07: fftwf_execute (in /usr/lib/libfftw3f.so.3.3.0)
>> ==13128== by 0x82006E6: itk::FFTWForwardFFTImageFilter<itk::Image<float, 1u>, itk::Image<std::complex<float>, 1u> >::GenerateData() (in /home/steve/Packages/debian-med/trunk/packages/insighttoolkit/build-area/insighttoolkit4-4.1.0/BUILD/bin/ITKFFTTestDriver)
>> ==13128== by 0x4947378: itk::ProcessObject::UpdateOutputData(itk::DataObject*) (in /home/steve/Packages/debian-med/trunk/packages/insighttoolkit/build-area/insighttoolkit4-4.1.0/BUILD/lib/libITKCommon-4.1.so.1)
>> ==13128== by 0x4952DC2: itk::DataObject::UpdateOutputData() (in /home/steve/Packages/debian-med/trunk/packages/insighttoolkit/build-area/insighttoolkit4-4.1.0/BUILD/lib/libITKCommon-4.1.so.1)
>> ==13128== by 0x4952CFF: itk::DataObject::Update() (in /home/steve/Packages/debian-med/trunk/packages/insighttoolkit/build-area/insighttoolkit4-4.1.0/BUILD/lib/libITKCommon-4.1.so.1)
>> ==13128== by 0x49436C5: itk::ProcessObject::Update() (in /home/steve/Packages/debian-med/trunk/packages/insighttoolkit/build-area/insighttoolkit4-4.1.0/BUILD/lib/libITKCommon-4.1.so.1)
>> ==13128== by 0x81FD526: int test_fft<float, 1u, itk::FFTWForwardFFTImageFilter<itk::Image<float, 1u>, itk::Image<std::complex<float>, 1u> >, itk::FFTWInverseFFTImageFilter<itk::Image<std::complex<float>, 1u>, itk::Image<float, 1u> > >(unsigned int*) (in /home/steve/Packages/debian-med/trunk/packages/insighttoolkit/build-area/insighttoolkit4-4.1.0/BUILD/bin/ITKFFTTestDriver)
>> ==13128== by 0x81F69C6: itkFFTWF_FFTTest(int, char**) (in /home/steve/Packages/debian-med/trunk/packages/insighttoolkit/build-area/insighttoolkit4-4.1.0/BUILD/bin/ITKFFTTestDriver)
>> ==13128== by 0x9370E15: (below main) (libc-start.c:228)
>> ==13128== If you believe this happened as a result of a stack
>> ==13128== overflow in your program's main thread (unlikely but
>> ==13128== possible), you can try to increase the size of the
>> ==13128== main thread stack using the --main-stacksize= flag.
>> ==13128== The main thread stack size used in this run was 8388608.
>
>
>
> --
> =------------------------------------------------------------------=
> Keep in touch www.onerussian.com
> Yaroslav Halchenko www.ohloh.net/accounts/yarikoptic
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