Update of the Integrative Genomics Viewer to version 2.0 ?
Dear Shaun and everybody,
There is a major update of the IGV, which may be interesting to follow.
Unfortunately, I have tried to build it from source but could not produce a JAR
file that can be executed. I have been reluctant to modify the master branch
of the Git repository where we manage the igv package, as there is a version
1.5.65 on the upstream download area, but not in their changelog, which
suggests that there may be some maintainance.
What shall I do: share work on version 2.0 in our master branch, make a
separate branch for the moment, or provide a temporary fork separately ?
For the record, the error I get is:
log4j:ERROR Could not find value for key log4j.appender.R
log4j:ERROR Could not instantiate appender named "R".
ERROR [2011-06-28 15:16:26,637] [DefaultExceptionHandler.java:42] [main] Unhandled exception
java.lang.NoClassDefFoundError: org/apache/log4j/RollingFileAppender
at org.broad.igv.ui.Main.initializeLog(Main.java:225)
at org.broad.igv.ui.Main.initApplication(Main.java:94)
at org.broad.igv.ui.Main.main(Main.java:70)
Caused by: java.lang.ClassNotFoundException: org.apache.log4j.RollingFileAppender
at java.net.URLClassLoader$1.run(URLClassLoader.java:217)
at java.security.AccessController.doPrivileged(Native Method)
at java.net.URLClassLoader.findClass(URLClassLoader.java:205)
at java.lang.ClassLoader.loadClass(ClassLoader.java:321)
at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:294)
at java.lang.ClassLoader.loadClass(ClassLoader.java:266)
at java.lang.ClassLoader.loadClassInternal(ClassLoader.java:334)
... 3 more
Have a nice day,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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