Re: OpenClinica in Debian-Med
Le 11/3/11 3:35 PM, Sebastian Hilbert a écrit :
> On Monday, October 31, 2011 01:59:44 PM Sebastian Hilbert wrote:
>
> I have done some more research on which jar files are needed by OpenClinica
>
> Here is a (maybe incomplete list)
>
> There are a few occurences where no package in Debian provides the jar.
> However for all jars sources exist and their is a license which should comply
> with Debian guidelines (see below)
>
> Please advise.
Regarding mail, there is gnumail I think that should match
>
> activation-1.0.2.jar - libgnujaf-java in sid
> antlr-2.7.6.jar - antlr in sid
> aopalliance-1.0.jar - libaopalliance-java in sid
> aspectjrt-1.6.8.jar - libaspectj-java in sid
> aspectjweaver-1.6.8.jar - libaspectj-java in sid
> avalon-framework-api-4.3.1.jar - libavalon-framework-java in sid
> avalon-framework-impl-4.3.1.jar - libavalon-framework-java in sid
> batik-anim-1.7.jar - libbatik-java in sid
> batik-awt-util-1.7.jar - libbatik-java in sid
> batik-bridge-1.7.jar - libbatik-java in sid
> batik-css-1.7.jar - libbatik-java in sid
> batik-dom-1.7.jar - libbatik-java in sid
> batik-ext-1.7.jar - libbatik-java in sid
> batik-extension-1.7.jar - libbatik-java in sid
> batik-gvt-1.7.jar - libbatik-java in sid
> batik-parser-1.7.jar - libbatik-java in sid
> batik-script-1.7.jar - libbatik-java in sid
> batik-svg-dom-1.7.jar - libbatik-java in sid
> batik-svggen-1.7.jar - libbatik-java in sid
> batik-transcoder-1.7.jar - libbatik-java in sid
> batik-util-1.7.jar - libbatik-java in sid
> batik-xml-1.7.jar - libbatik-java in sid
> bcmail-jdk14-138.jar - libcmail-java in sid
> bcprov-jdk14-138.jar - libcprov-java in sid
> castor-1.2.jar - ?? not in debian - www.castor.org - Apache-2.0-style license
> castor-core-1.3.1.jar - libcastor-core-java in sid
> castor-xml-1.3.1.jar - libcastor-core-xml in sid
> cglib-nodep-2.1_3.jar - libcglib2.1-java in sid
> commons-beanutils-1.8.0.jar - libcommons-beantutils-java in sid
> commons-codec-1.3.jar - libcommons-codec-java in sid
> commons-collections-3.2.1.jar - libcommons-collections-java in sid
> commons-dbcp-1.2.2.jar - libcommons-dhcp-java in sid
> commons-digester-1.7.jar - libcommons-digester-java in sid
> commons-discovery-0.2.jar - libcommons-dicovery-java in sid
> commons-fileupload-1.2.1.jar - libcommons-fileupload-java in sid
> commons-httpclient-3.0.1.jar - libcommons-httpclient-java in sid
> commons-io-1.4.jar - libcommons-io-java in sid
> commons-lang-2.3.jar - libcommons-lang-java in sid
> commons-logging-1.0.4.jar - libcommons-logging-java in sid
> commons-logging-api-1.0.4.jar - libcommons-logging-java in sid
> commons-math-1.1.jar - libcommons-math-java in sid
> commons-pool-1.3.jar - libcommons-pool-java in sid
> commons-validator-1.3.1.jar - libcommons-validator-java in sid
> dom4j-1.6.1.jar - libdom4j-java in sid
> fop-1.0.jar - fop in sid
> hibernate-annotations-3.5.1-Final.jar - libhibernate-annotations-java (3.6)
> hibernate-commons-annotations-3.2.0.Final.jar - libhibernate-commons-
> annotations-java
> hibernate-core-3.5.1-Final.jar - libhibernate3-java (3.6)
> hibernate-jpa-2.0-api-1.0.0.Final.jar - not in Debian (LGPL)
> hibernate-validator-4.0.2.GA.jar - libhibernate-validator-java in sid
> itext-2.1.2.jar - libitext-java in sid
> jackson-core-asl-1.5.3.jar - libjackson-json-java in sid
> jackson-mapper-asl-1.5.3.jar - libjackson-json-java in sid
> janino-2.5.10.jar - janino in sid
> javassist-3.8.0.GA.jar - libjavassist-java (3.12 sid) (3.8 lenny)
> jaxb-api-2.1.jar - libjaxme-java in sid (jaxmeapi.jar) ? or included in
> openjdk ? license: CDDL / GPLv2
> jaxb-impl-2.1.3.jar - libjaxme-java in sid (jaxmeapi.jar) ? or included in
> openjdk ? license: CDDL / GPLv2
> jcl-over-slf4j-1.5.6.jar - libslj4j-java in sid
> jdom-1.1.jar - libjdom1-java in sid
> jmesa-2.4.2.jar - not in Debian - Apache 2 license
> joda-time-1.6.jar - libjoda-time-java
> jstl-1.1.2.jar - libjstl1.1-java
> jta-1.1.jar - not in Debian either from Oracle (GPL) or libgeronimo-jta-1-1-
> spec-java
> jul-to-slf4j-1.5.6.jar - libslj4j-java in sid
> jxl-2.6.6.jar - libjxcelapi-java in sid
> liquibase-core-1.9.5.jar - not in Debian (Apache 2.0)
> liquibase-plugin-1.9.5.0.jar - not in Debian (Apache 2.0)
> log4j-1.2.14.jar - liblog4j1.2-java in sid
> logback-access-0.9.20.jar - not in Debian (EPL v1.0 or LGPL 2.1)
> logback-classic-0.9.20.jar - liblogback-java in sid
> logback-core-0.9.20.jar - liblogback-java in sid
> mail-1.4.jar - not in Debian (CDDL license)
> ojdbc14-10g.jar - not in Debian - closed - some Oracle distribution license -
> can skipped when using PG
> OpenClinica-core-3.1.1-Community.jar - LPGL
> openclinica-odm-0.1.0.BUILD-SNAPSHOT.jar - LGPL
> oro-2.0.8.jar - liboro-java in sid
> persistence-api-1.0.jar - not in Debian (Oracle CDDL) - shipped by glassfish-
> javaee
> pjl-comp-filter-1.6.4.jar - not in Debian (Apache 2.0)
> poi-3.0.1-FINAL.jar - libapache-poi-java in sid
> postgresql-8.1-404.jdbc3.jar - libpg-java in sid
> quartz-1.8.0.jar - libquartz-java (1.7.3)
> quartz-oracle-1.8.0.jar - not in Debian (not needed for PG)
> rome-1.0.jar - librome-java in sid
> rome-fetcher-1.0.jar - not in Debian (Apache 2)
> saxon-8.7.jar - libsaxon-java in sid (6.5.5)
> saxon-dom-8.7.jar - not in Debian (Mozilla Public license)
> sitemesh-2.3.jar - libsitemesh-java in sid
> slf4j-api-1.5.6.jar - libslj4j-java in sid
> spring-aop-3.0.5.RELEASE.jar - libspring-aop-java in sid
> spring-asm-3.0.5.RELEASE.jar - not in Debian
> spring-aspects-3.0.5.RELEASE.jar - libspring-aspects-2.5-java !!
> spring-beans-3.0.5.RELEASE.jar - libspring-beans-java in sid
> spring-context-3.0.5.RELEASE.jar - libspring-context-java in sid
> spring-context-support-3.0.5.RELEASE.jar - libspring-context-support-java
> spring-core-3.0.5.RELEASE.jar - libspring-core-java in sid
> spring-expression-3.0.5.RELEASE.jar - libspring-expression-java
> spring-jdbc-3.0.5.RELEASE.jar - libspring-jdbc-java in sid
> spring-orm-3.0.5.RELEASE.jar - libspring-orm-java in sid
> spring-oxm-3.0.5.RELEASE.jar - libspring-oxm-java in sid
> spring-security-acl-3.0.5.RELEASE.jar - libspring-security-acl-2.0-java !!
> spring-security-config-3.0.5.RELEASE.jar - not in Debian (Apache 2.0 license)
> spring-security-core-3.0.5.RELEASE.jar - not in Debian (Apache 2.0 license)
> spring-security-oauth-1.0.0.M2.jar - not in Debian (Apache 2.0 license)
> spring-security-taglibs-3.0.5.RELEASE.jar - libspring-security-taglibs-2.0-
> java !!
> spring-security-web-3.0.5.RELEASE.jar - not in Debian
> spring-test-3.0.5.RELEASE.jar - libstring-test-jav in sid
> spring-tx-3.0.5.RELEASE.jar - libspring-tx-2.5-java !!
> spring-web-3.0.5.RELEASE.jar - libspring-web-java in sid
> spring-webmvc-3.0.5.RELEASE.jar - libspring-webmvc-2.5-java
> standard-1.1.2.jar - not in Debian (license ?)
> stax-api-1.0-2.jar - libstax-java in sid
> transaction-api-1.1.jar - not in Debian (GPL) - shipped by glassfish-javaee
> validation-api-1.0.0.GA.jar - not in Debian (Apache 2)
> xalan-2.6.0.jar - libxalan2-java in sid
> xercesImpl-2.4.0.jar - libxerces2-java in sid
> xml-apis-1.0.b2.jar - libjaxp1.3-java in sid
> xml-apis-ext-1.3.04.jar - libxml-commons-external-java in sid
> xmlgraphics-commons-1.4.jar - libxmlgraphics-commons-java
>
> jars not availabe as Debian packages along with their licenses.
>
> castor-1.2.jar - ?? not in debian - www.castor.org - Apache-2.0-style license
> hibernate-jpa-2.0-api-1.0.0.Final.jar - not in Debian (LGPL)
> jaxb-api-2.1.jar - libjaxme-java in sid (jaxmeapi.jar) ? or included in
> openjdk ? license: CDDL / GPLv2
> jaxb-impl-2.1.3.jar - libjaxme-java in sid (jaxmeapi.jar) ? or included in
> openjdk ? license: CDDL / GPLv2
> jmesa-2.4.2.jar - not in Debian - Apache 2 license
> jta-1.1.jar - not in Debian either from Oracle (GPL) or libgeronimo-jta-1-1-
> spec-java
> liquibase-core-1.9.5.jar - not in Debian (Apache 2.0)
> logback-access-0.9.20.jar - not in Debian (EPL v1.0 or LGPL 2.1)
> mail-1.4.jar - not in Debian (CDDL license)
> ojdbc14-10g.jar - not in Debian - closed - some Oracle distribution license -
> can skipped when using PG
> OpenClinica-core-3.1.1-Community.jar - LPGL
> openclinica-odm-0.1.0.BUILD-SNAPSHOT.jar - LGPL
> persistence-api-1.0.jar - not in Debian (Oracle CDDL) - shipped by glassfish-
> javaee
> pjl-comp-filter-1.6.4.jar - not in Debian (Apache 2.0)
> pjl-comp-filter-1.6.4.jar - not in Debian (Apache 2.0)
> quartz-oracle-1.8.0.jar - not in Debian (not needed for PG)
> rome-fetcher-1.0.jar - not in Debian (Apache 2)
> saxon-dom-8.7.jar - not in Debian (Mozilla Public license)
> spring-asm-3.0.5.RELEASE.jar - not in Debian
> spring-security-config-3.0.5.RELEASE.jar - not in Debian (Apache 2.0 license)
> spring-security-core-3.0.5.RELEASE.jar - not in Debian (Apache 2.0 license)
> spring-security-oauth-1.0.0.M2.jar - not in Debian (Apache 2.0 license)
> standard-1.1.2.jar - not in Debian (license ?)
> transaction-api-1.1.jar - not in Debian (GPL) - shipped by glassfish-javaee
> validation-api-1.0.0.GA.jar - not in Debian (Apache 2)
>
> Best regards,
> Sebastian Hilbert
>
>
--
Olivier Sallou
IRISA / University of Rennes 1
Campus de Beaulieu, 35000 RENNES - FRANCE
Tel: 02.99.84.71.95
gpg key id: 4096R/326D8438 (pgp.mit.edu)
Key fingerprint = 5FB4 6F83 D3B9 5204 6335 D26D 78DC 68DB 326D 8438
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