Hello,
I get the following error when trying to build the biomaj debian package from SVN. Anybody know what the error is? I'm guessing a missing dependency.
thanks
Scott
compile:
[mkdir] Created
dir: /home/scottc/Projects/tools/debian-med/trunk/packages/biomaj/build-area/biomaj-1.1.0/usr/share/biomaj/lib/vendor/commons-cli2-build/build/classes
[mkdir] Created
dir: /home/scottc/Projects/tools/debian-med/trunk/packages/biomaj/build-area/biomaj-1.1.0/usr/share/biomaj/lib/vendor/commons-cli2-build/dist
[javac] /home/scottc/Projects/tools/debian-med/trunk/packages/biomaj/build-area/biomaj-1.1.0/usr/share/biomaj/lib/vendor/commons-cli2.xml:75: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds
[javac] Compiling 43 source files
to /home/scottc/Projects/tools/debian-med/trunk/packages/biomaj/build-area/biomaj-1.1.0/usr/share/biomaj/lib/vendor/commons-cli2-build/build/classes
[javac] failed to read ecj.jar (reconfigure with
--with-ecj-jar): /usr/share/java/eclipse-ecj.jar
[javac] failed to load org.eclipse.jdt.internal.compiler.batch.Main
from ecj.jar: /usr/share/java/eclipse-ecj.jar
[javac] java.lang.ClassNotFoundException:
org.eclipse.jdt.internal.compiler.batch.Main not found in
java.net.URLClassLoader{urls=[file:/usr/share/java/eclipse-ecj.jar],
parent=gnu.gcj.runtime.SystemClassLoader{urls=[file:/usr/share/ant/lib/ant-launcher.jar,file:/usr/share/java/xmlParserAPIs.jar,file:/usr/share/java/xercesImpl.jar], parent=gnu.gcj.runtime.ExtensionClassLoader{urls=[], parent=null}}}
[javac] at java.net.URLClassLoader.findClass(libgcj.so.10)
[javac] at java.lang.ClassLoader.loadClass(libgcj.so.10)
[javac] at java.lang.ClassLoader.loadClass(libgcj.so.10)
[javac] at com.sun.tools.javac.Main.<clinit>(Main.java:91)
[javac] at java.lang.Class.initializeClass(libgcj.so.10)
[javac] at java.lang.Class.forName(libgcj.so.10)
[javac] at java.lang.Class.forName(libgcj.so.10)
[javac] at
org.apache.tools.ant.taskdefs.compilers.CompilerAdapterFactory.doesModernCompilerExist(CompilerAdapterFactory.java:165)
[javac] at
org.apache.tools.ant.taskdefs.compilers.CompilerAdapterFactory.getCompiler(CompilerAdapterFactory.java:124)
[javac] at
org.apache.tools.ant.taskdefs.Javac.compile(Javac.java:1088)
[javac] at
org.apache.tools.ant.taskdefs.Javac.execute(Javac.java:906)
[javac] at
org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:291)
[javac] at java.lang.reflect.Method.invoke(libgcj.so.10)
[javac] at
org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:106)
[javac] at org.apache.tools.ant.Task.perform(Task.java:348)
[javac] at org.apache.tools.ant.Target.execute(Target.java:390)
[javac] at
org.apache.tools.ant.Target.performTasks(Target.java:411)
[javac] at
org.apache.tools.ant.Project.executeSortedTargets(Project.java:1360)
[javac] at
org.apache.tools.ant.Project.executeTarget(Project.java:1329)
[javac] at
org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:41)
[javac] at
org.apache.tools.ant.Project.executeTargets(Project.java:1212)
[javac] at org.apache.tools.ant.Main.runBuild(Main.java:801)
[javac] at org.apache.tools.ant.Main.startAnt(Main.java:218)
[javac] at
org.apache.tools.ant.launch.Launcher.run(Launcher.java:280)
[javac] at
org.apache.tools.ant.launch.Launcher.main(Launcher.java:109)
BUILD FAILED
/home/scottc/Projects/tools/debian-med/trunk/packages/biomaj/build-area/biomaj-1.1.0/usr/share/biomaj/lib/vendor/commons-cli2.xml:75: java.lang.ExceptionInInitializerError
at java.lang.Class.initializeClass(libgcj.so.10)
at java.lang.Class.forName(libgcj.so.10)
at java.lang.Class.forName(libgcj.so.10)
at
org.apache.tools.ant.taskdefs.compilers.CompilerAdapterFactory.doesModernCompilerExist(CompilerAdapterFactory.java:165)
at
org.apache.tools.ant.taskdefs.compilers.CompilerAdapterFactory.getCompiler(CompilerAdapterFactory.java:124)
at org.apache.tools.ant.taskdefs.Javac.compile(Javac.java:1088)
at org.apache.tools.ant.taskdefs.Javac.execute(Javac.java:906)
at
org.apache.tools.ant.UnknownElement.execute(UnknownElement.java:291)
at java.lang.reflect.Method.invoke(libgcj.so.10)
at
org.apache.tools.ant.dispatch.DispatchUtils.execute(DispatchUtils.java:106)
at org.apache.tools.ant.Task.perform(Task.java:348)
at org.apache.tools.ant.Target.execute(Target.java:390)
at org.apache.tools.ant.Target.performTasks(Target.java:411)
at
org.apache.tools.ant.Project.executeSortedTargets(Project.java:1360)
at org.apache.tools.ant.Project.executeTarget(Project.java:1329)
at
org.apache.tools.ant.helper.DefaultExecutor.executeTargets(DefaultExecutor.java:41)
at org.apache.tools.ant.Project.executeTargets(Project.java:1212)
at org.apache.tools.ant.Main.runBuild(Main.java:801)
at org.apache.tools.ant.Main.startAnt(Main.java:218)
at org.apache.tools.ant.launch.Launcher.run(Launcher.java:280)
at org.apache.tools.ant.launch.Launcher.main(Launcher.java:109)
Caused by: java.lang.NullPointerException
at com.sun.tools.javac.Main.<clinit>(Main.java:106)
at java.lang.Class.initializeClass(libgcj.so.10)
...20 more