Bug#552101: ITP: beast-mcmc -- Bayesian MCMC analysis of molecular sequences
Package: wnpp
Severity: wishlist
Owner: Felix Feyertag <felix.feyertag@googlemail.com>
Source: beast-mcmc
Section: science
Priority: optional
Maintainer: Debian Med Packaging Team
<debian-med-packaging@lists.alioth.debian.org>
DM-Upload-Allowed: yes
Uploaders: Felix Feyertag <felix.feyertag@googlemail.com>
Build-Depends: debhelper (>= 7)
Standards-Version: 3.8.0
Vcs-Browser:
http://svn.debian.org/wsvn/debian-med/trunk/packages/beast-mcmc/trunk/?rev=0&sc=0
Vcs-Svn:
svn://svn.debian.org/svn/debian-med/trunk/packages/beast-mcmc/trunk/
XS-Autobuild: yes
Homepage: http://beast.bio.ed.ac.uk/
Package: beast-mcmc
Architecture: any
Depends: ${shlibs:Depends}, ${misc:Depends}
Description: Bayesian MCMC analysis of molecular sequences
BEAST is a cross-platform program for Bayesian MCMC analysis of molecular
sequences. It is entirely orientated towards rooted, time-measured
phylogenies inferred using strict or relaxed molecular clock models. It
can be used as a method of reconstructing phylogenies but is also a
framework for testing evolutionary hypotheses without conditioning on a
single tree topology. BEAST uses MCMC to average over tree space, so that
each tree is weighted proportional to its posterior probability. Included
is a simple to use user-interface program for setting up standard
analyses and a suit of programs for analysing the results.
.
When publishing results using this software please cite:
Drummond AJ, Rambaut A (2007) "BEAST: Bayesian evolutionary analysis by
sampling trees." BMC Evolutionary Biology 7:214
Name: BEAST-MCMC
Source: http://beast-mcmc.googlecode.com/svn/trunk/
Copyright: © 2002-2006 Alexei Drummond and Andrew Rambaut
License: LGPL-2
BEAST is distributed under the terms of the GNU Lesser General Public
License.
See the notice in individual files and the file LICENSE for licensing
details.
On a Debian GNU/Linux system, the GNU Lesser GPL license version 2 is
included
in the file ‘/usr/share/common-licenses/LGPL-2’, and the GNU GPL license
version 2 is included in the file ‘/usr/share/common-licenses/GPL-2’.
License: other
BEAST includes software libraries from projects whose licensing
terms require that the following notices be included when they are
distributed in binary form and that the recipient be given a copy of
their respective licenses.
This product includes software developed by the
JDOM Project (http://www.jdom.org/)
This product includes software developed by
The Apache Software Foundation (http://www.apache.org/)
The license for JDOM can be read in the LICENSE.txt file in the
source distribution available at http://www.jdom.org/
The license for the Commons Math library can be read at
http://www.apache.org/licenses/LICENSE-2.0 or in the LICENSE.txt file
in the source distribution available at
http://jakarta.apache.org/commons/math/
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