Bug#530753: ITP: staden-io-lib -- The Staden io_lib and its associated programs (three binary packages).
Package: wnpp
Severity: wishlist
Owner: Charles Plessy <plessy@debian.org>
Package name : staden-io-lib
Version : 1.11.6.1
Programming Lang: C
Description : The Staden io_lib and its associated programs (three binary packages).
debian/control
--------------
Source: staden-io-lib
Section: science
Priority: optional
Maintainer: Debian-Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
DM-Upload-Allowed: yes
Uploaders: Charles Plessy <plessy@debian.org>
Build-Depends: debhelper (>= 7), autotools-dev, quilt
Standards-Version: 3.8.1
Homepage: http://staden.sourceforge.net/
Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/staden-io-lib/trunk/?rev=0&sc=0
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/staden-io-lib/trunk/
Package: staden-io-lib-utils
Section: science
Architecture: any
Depends: ${shlibs:Depends}, ${misc:Depends}
Description: programs for maniuplating DNA sequencing files
The io_lib from the Staden package is a library of file reading and writing
code to provide a general purpose trace file (and Experiment File) reading
interface. It has been compiled and tested on a variety of unix systems,
MacOS X and MS Windows.
.
This package contains the programs that are distributed with the Staden io_lib
for manipulating and converting sequencing data files, and in particular files
to maniuplate short reads generated by second and third generation sequencers
and stored in SRF format.
Package: libstaden-read-dev
Section: libdevel
Architecture: any
Depends: libstaden-read1 (= ${binary:Version}), ${misc:Depends}
Description: development files for libstaden-read
This package contains the header and development files needed to build
programs and packages using the Staden io_lib.
Package: libstaden-read1
Section: libs
Architecture: any
Depends: ${shlibs:Depends}, ${misc:Depends}
Description: Staden library for reading and writing DNA sequencing results.
This package contains the Staden io_lib, that is renamed in Debian and Fedora
‘staden-read’ instead of ‘read’. This library supports various DNA sequence
read formats, in particular SCF, ABI, ALF, CTF, ZTR, SFF and SRF.
debian/copyright
----------------
Format: Machine-readable license summary, see ‘http://dep.debian.net/deps/dep5/’;.
Name: io-lib
Contact: James Bonfield, Simon Dear, Rodger Staden (io-lib)
Source: http://qa.debian.org/watch/sf.php/staden/io_lib-1.11.6.1.tar.gz
Copyright: © 1994 Medical Research Council
© Genome Research Ltd (GRL)
License: GRL or MRC
Upstream-Comment: Newer files and changes are copyright Genome Research Ltd
using the following compatible BSD licence. Disentangling which is which is
somewhat tricky, but it's sufficient to say that work in the CVS tree from
August 2002 will be bound by the GRL licence instead.
License: GRL
Copyright (c), Genome Research Ltd (GRL).
All rights reserved.
.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions
are met:
.
* Redistributions of source code must retain the above copyright
notice, this list of conditions and the following disclaimer.
.
* Redistributions in binary form must reproduce the above
copyright notice, this list of conditions and the following
disclaimer in the documentation and/or other materials
provided with the distribution.
.
* Neither the name of the Genome Research Limited nor the
names of its contributors may be used to endorse or promote
products derived from this software without specific prior
written permission.
.
THIS SOFTWARE IS PROVIDED BY GRL ``AS IS'' AND ANY EXPRESS OR
IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED
WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
ARE DISCLAIMED. IN NO EVENT SHALL GRL BE LIABLE FOR ANY DIRECT,
INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
(INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR
SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION)
HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT,
STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED
OF THE POSSIBILITY OF SUCH DAMAGE.
License: MRC
Copyright (c) Medical Research Council 1994. All rights reserved.
.
Permission to use, copy, modify and distribute this software and its
documentation for any purpose is hereby granted without fee, provided that
this copyright and notice appears in all copies.
.
This file was written by James Bonfield, Simon Dear, Rodger Staden,
as part of the Staden Package at the MRC Laboratory of Molecular
Biology, Hills Road, Cambridge, CB2 2QH, United Kingdom.
.
MRC disclaims all warranties with regard to this software.
Files: io_lib/open_trace_file.c
License: GRL or MRC, and 454
This files contains some source code owned by 454 Life Sciences Corporation.
License: 454
Copyright (c)[2001-2005] 454 Life Sciences Corporation. All Rights Reserved.
.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
.
IN NO EVENT SHALL LICENSOR BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING
FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE.
.
Permission to use, copy, modify and distribute this software and its
documentation for any purpose is hereby granted without fee, provided
that this copyright and notice appears in all copies.
Files: io_lib/sff.c:
Copyright: © Genome Research Limited (GRL)
© 2001-2005 454 Life Sciences Corporation.
License: GRL and 454
This file contains some extracts from a file owened by the 454 Life Sciences Corporation.
Files: debian/*
Copyright: 2008–2009 Charles Plessy <plessy@debian.org>
License: PD
Please treat these files as if they were in your country’s public domain.
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