[Debian Wiki] Update of "DebianMedImaging" by JanBeyer
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http://wiki.debian.org/DebianMedImaging
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added gwyddion
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||[http://packages.debian.org/unstable/source/dicomnifti dicomnifti] ||The dinifti program converts MRI images stored in DICOM format to NIfTI format. Files in the NIfTI format can be used with the programs FSL, AFNI and SPM. Dinifti converts single files, but also supports batch conversions of complete directories. ||GPL ||[https://www.cbi.nyu.edu/public/software/dinifti/ link] ||
||[http://packages.debian.org/unstable/source/fsl fsl] ||FSL is a comprehensive library of image analysis and statistical tools for fMRI, MRI, and DTI brain imaging data. ||non-free ||[http://www.fmrib.ox.ac.uk/fsl/ link] ||
||[http://packages.debian.org/unstable/source/fslview fslview] ||FSLView is a viewer for 3d and 4d MRI data as well as DTI images. FSLView is able to display ANALYZE and NIFTI files. The viewer supports multiple 2d viewing modes (orthogonal, lightbox or single slices), but also 3d volume rendering. Additionally FSLView is able to visualize timeseries and can overlay metrical and stereotaxic atlas data. FSLView is part of FSL. ||GPL ||[http://www.fmrib.ox.ac.uk/fsl/fslview link] ||
+ ||[http://packages.debian.org/unstable/source/gwyddion gwyddion] ||Gwyddion is a modular program for Scanning Probe Microscopy (SPM) data visualization and analysis. It is primarily intended for analysis of height field data obtained by microscopy techniques like Atomic Force Microscopy (AFM), Magnetic Force Microscopy (MFM), Scanning Tunneling Microscopy (STM), Near-field Scanning Optical Microscopy (SNOM or NSOM) and others. However, it can be used for arbitrary height field and image analysis.||GPL-2+||[http://gwyddion.net/ link] ||
||[http://packages.debian.org/unstable/source/imagej ImageJ] ||ImageJ is a Java image processing program inspired by NIH Image. It can display, edit, analyze, process, save and print 8-bit, 16-bit and 32-bit images. It can read many image formats including TIFF, GIF, JPEG, BMP, DICOM, FITS and "raw". ||public domain ||[http://rsb.info.nih.gov/ij/ link] ||
||<style="vertical-align: top;">[http://packages.debian.org/source/insighttoolkit ITK] ||<style="vertical-align: top;">ITK is the Insight Tool Kit: an open-source software toolkit for performing registration and segmentation. Segmentation is the process of identifying and classifying data found in a digitally sampled representation. Typically the sampled representation is an image acquired from such medical instrumentation as CT or MRI scanners. Registration is the task of aligning or developing correspondences between data. For example, in the medical environment, a CT scan may be aligned with a MRI scan in order to combine the information contained in both. ||<style="vertical-align: top;">BSDish ||<style="vertical-align: top;">[http://www.itk.org/ link] ||
||[http://packages.debian.org/unstable/source/nifticlib nifticlib] ||Niftilib is a set of i/o libraries for reading and writing files in the NIfTI-1 data format. NIfTI-1 is a binary file format for storing medical image data, e.g. magnetic resonance image (MRI) and functional MRI (fMRI) brain images. ||public domain ||[http://niftilib.sourceforge.net link] ||
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