[patch] Re: Please add sibsim4 to the web pages (Re: sibsim4_0.14-1_i386.changes is NEW)
Le Wed, Jan 10, 2007 at 08:04:33AM +0100, Andreas Tille a écrit :
> Hi,
>
> Tobias, copuld you please add this package to
>
> http://www.debian.org/devel/debian-med/microbio
Hi Tobias,
Here is a patch for simplifying your work. This would pre-empt the
acceptance of simsim4 by the administrators of the ftmpaster machine,
and place is in the "available" section.
Have a nice day,
--
Charles Plessy
http://charles.plessy.org
Wako, Saitama, Japan
--- microbio.wml.old 2007-01-11 07:53:07.000000000 +0900
+++ microbio.wml 2007-01-11 07:58:49.000000000 +0900
@@ -472,6 +472,18 @@
locally improve the alignment.
</project>
+<project name="SIBsim4"
+ url="http://sibsim4.sourceforge.net/";
+ license="<free />"
+ deb="http://packages.debian.org/unstable/science/sibsim4";>
+ The SIBsim4 project is based on sim4, which is a program designed to align an
+ expressed DNA sequence with a genomic sequence, allowing for introns. Sim4
+ was written by Liliana Florea while working in Webb Miller's lab at the
+ Pennsylvania State University. SIBsim4 is a fairly extensive rewrite of the
+ original code with the following goals: speed improvement; usability of
+ large, chromosome scale, DNA sequences; more detailed output about splice
+ types; more detailed output about polyA sites.
+</project>
<project name="T-Coffee"
url="http://igs-server.cnrs-mrs.fr/~cnotred/Projects_home_page/t_coffee_home_page.html";
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