Re: patch for microbio.wml
On Mon, Apr 10, 2006 at 10:04:17AM +0900, Charles Plessy wrote :
> In the meantime, here is a patch for microbio.wml which adds Dialign
> (ITP) and Muscle (in main), and moves TreeView X in the "unofficial debs
> available" section.
Sorry for the patchless mail...
--
Charles
--- microbio.wml_old 2006-04-10 09:55:00.000000000 +0900
+++ microbio.wml 2006-04-10 09:57:18.000000000 +0900
@@ -265,6 +265,16 @@
</ul>
</project>
+<project name="Muscle"
+ url="http://www.drive5.com/muscle/";
+ license="Public Domain"
+ deb="http://packages.debian.org/unstable/science/muscle";>
+ MUSCLE is a multiple alignment program for protein sequences. MUSCLE
+ stands for multiple sequence comparison by log-expectation. In the
+ authors tests, MUSCLE achieved the highest scores of all tested
+ programs on several alignment accuracy benchmarks, and is also one of
+ the fastest programs out there.
+</project>
<project name="NJplot"
url="http://pbil.univ-lyon1.fr/software/njplot.html";
@@ -648,6 +658,16 @@
expenditure.
</project>
+<project name="TreeView X"
+ url="http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/";
+ license="GPL"
+ deb="http://mentors.debian.net/debian/pool/main/t/treeviewx/";>
+ TreeView X is a program to display phylogenetic trees on Linux and Unix
+ platforms. It can read and display NEXUS and Newick format tree files
+ (such as those output by PAUP*, ClustalX, TREE-PUZZLE, and other
+ programs).
+</project>
+
######################################################################
## Not available as a Debian package
@@ -677,6 +697,16 @@
</p>
</project>
+<project name="Dialign"
+ url="http://dialign.gobics.de/";
+ licence="LGPL">
+ DIALIGN2 is a command line tool to perform multiple alignment of
+ protein or DNA sequences. It constructs alignments from gapfree pairs
+ of similar segments of the sequences. This scoring scheme for
+ alignments is the basic difference between DIALIGN and other global or
+ local alignment methods. Note that DIALIGN does not employ any kind of
+ gap penalty.
+</project>
<project name="Genographer"
url="http://hordeum.oscs.montana.edu/genographer/";
@@ -723,11 +753,3 @@
</project>
-<project name="TreeView"
- url="http://darwin.zoology.gla.ac.uk/~rpage/treeviewx/";
- license="GPL">
- TreeView X is a program to display phylogenetic trees on Linux and Unix
- platforms. It can read and display NEXUS and Newick format tree files
- (such as those output by PAUP*, ClustalX, TREE-PUZZLE, and other
- programs).
-</project>
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