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Re: Debian software which allows searching nucleotide / amino acid sequence and showing intron/exon boundries or begin/termination of translations

Mark Farnell <mark.farnell@gmail.com> writes:

> One can use pubmed nucleotide easily for searching DNA sequences for a
> particular gene.  However is there any website / debian software which
> also shows other information such as intron/exon boundaries, beginning
> / end of transcriptions?  For aa sequences, to show the boundries of
> exons.

Have you tried sequin, in the ncbi-tools-x11 package?

> Also, is there any Debian program which can automate design of primers
> for different purposes?

Not sure about this one, but the ncbi-epcr package will let you
simulate the effects of given primers on a given sequence.

Aaron M. Ucko, KB1CJC (amu at alum.mit.edu, ucko at debian.org)
Finger amu@monk.mit.edu (NOT a valid e-mail address) for more info.

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