The biomaj package introduced new or modified debconf templates. This is often a good moment for a review to help the package maintainer following the general suggested writing style and track down typos and errors in the use of English language. A bug report has been sent against the package: 653408 If someone wants to pick up this review, please answer to this mail, in the mailing list, with an [ITR] (Intent To Review) label. The templates file is attached. To propose the file you reviewed for peer review, please send a [RFR] (Request For Review) mail with the reviewed file attached...then a few days later, when no more contributions come, a summary mail with a [LCFC] (Last Chance For Comments) label. These RFR and LCFC mails should CC the opened bug report. Finally, after no more comments coming to the LCFC mail, you can send the reviewed templates file in the bug report. Then, please notify the list with a last mail using a [BTS] label with the bug number. Helping the package maintainer to deal with induced translation updates at that moment will be nice. If you're not comfortable with that part of the process, please hand it off to a translator. --
Template: biomaj/jdk_home Type: string _Description: The JDK home directory: Template: biomaj/mysql Type: boolean _Description: Want to configure MySQL connection now ? Template: biomaj/mysql_host Type: string _Description: Enter MySQL server address: Template: biomaj/mysql_login Type: string _Description: User login for biomaj database: Template: biomaj/mysql_passwd Type: password _Description: User password for biomaj database:
Source: biomaj
Section: science
Priority: optional
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Olivier Sallou <olivier.sallou@irisa.fr>
DM-Upload-Allowed: yes
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/biomaj/trunk/
Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/biomaj/trunk/?rev=0&sc=0
Homepage: http://biomaj.genouest.org
Build-Depends: debhelper (>= 7.1)
Build-Depends-Indep: debconf, po-debconf, openjdk-6-jdk|default-jdk|sun-java6-jdk, ant, libhsqldb-java, ant-contrib,
liblog4j1.2-java, libcommons-net2-java, libcommons-dbcp-java, libgnumail-java, libcommons-pool-java,
libgnujaf-java, libjgoodies-forms-java, liboro-java, libregexp-java,
libjcommon-java, libjsch-java, libjdom1-java, junit4, libsaxonb-java, libjdepend-java,
javahelper (>=0.25), libcommons-cli-java, libcommons-codec-java, libcommons-httpclient-java, libcommons-logging-java,
libjets3t-java
Standards-Version: 3.9.2
Package: biomaj
Architecture: all
Depends: ${misc:Depends}, ${java:Depends},
openjdk-6-jdk|default-jdk|sun-java6-jdk, ant, libmysql-java, debconf,
libhsqldb-java,ant-contrib,liblog4j1.2-java,libcommons-net2-java (>= 2.2),libcommons-dbcp-java (>= 1.2),
libgnumail-java, libcommons-pool-java (>= 1.5), libgnujaf-java, libjgoodies-forms-java (>= 1.2),
liboro-java (>= 2.0),libregexp-java (>= 1.4),libjcommon-java (>= 1.0),libjsch-java (>= 0.1.42),
libjdom1-java (>= 1.1),junit4,libsaxonb-java (>= 0.9), libcommons-cli-java, libcommons-codec-java,
libcommons-httpclient-java, libcommons-logging-java,libjets3t-java, perl,
mysql-server
Suggests: ncbi-tools-bin, blast2
Description: Biological banks updater
BioMAJ downloads remote data banks, check their status and apply transformation
workflows, with consistent state,to provide ready-to-use data to biologists and
bioinformaticians. For example, it can transform original fasta files to blast
indexes. It is very flexible and post-processes can be extended very easily.
Package: biomaj-properties
Architecture: all
Depends: ${misc:Depends}
Description: bank properties file examples
This package contains a set of bank properties that can be used as
examples for biomaj. It contains many existing banks descriptions
with or without workflows to transform data. Some files may required
additional programs for post processes (blast..).
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