The biomaj package introduced new or modified debconf templates. This is often a good moment for a review to help the package maintainer following the general suggested writing style and track down typos and errors in the use of English language. A bug report has been sent against the package: 653408 If someone wants to pick up this review, please answer to this mail, in the mailing list, with an [ITR] (Intent To Review) label. The templates file is attached. To propose the file you reviewed for peer review, please send a [RFR] (Request For Review) mail with the reviewed file attached...then a few days later, when no more contributions come, a summary mail with a [LCFC] (Last Chance For Comments) label. These RFR and LCFC mails should CC the opened bug report. Finally, after no more comments coming to the LCFC mail, you can send the reviewed templates file in the bug report. Then, please notify the list with a last mail using a [BTS] label with the bug number. Helping the package maintainer to deal with induced translation updates at that moment will be nice. If you're not comfortable with that part of the process, please hand it off to a translator. --
Template: biomaj/jdk_home Type: string _Description: The JDK home directory: Template: biomaj/mysql Type: boolean _Description: Want to configure MySQL connection now ? Template: biomaj/mysql_host Type: string _Description: Enter MySQL server address: Template: biomaj/mysql_login Type: string _Description: User login for biomaj database: Template: biomaj/mysql_passwd Type: password _Description: User password for biomaj database:
Source: biomaj Section: science Priority: optional Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org> Uploaders: Olivier Sallou <olivier.sallou@irisa.fr> DM-Upload-Allowed: yes Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/biomaj/trunk/ Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/biomaj/trunk/?rev=0&sc=0 Homepage: http://biomaj.genouest.org Build-Depends: debhelper (>= 7.1) Build-Depends-Indep: debconf, po-debconf, openjdk-6-jdk|default-jdk|sun-java6-jdk, ant, libhsqldb-java, ant-contrib, liblog4j1.2-java, libcommons-net2-java, libcommons-dbcp-java, libgnumail-java, libcommons-pool-java, libgnujaf-java, libjgoodies-forms-java, liboro-java, libregexp-java, libjcommon-java, libjsch-java, libjdom1-java, junit4, libsaxonb-java, libjdepend-java, javahelper (>=0.25), libcommons-cli-java, libcommons-codec-java, libcommons-httpclient-java, libcommons-logging-java, libjets3t-java Standards-Version: 3.9.2 Package: biomaj Architecture: all Depends: ${misc:Depends}, ${java:Depends}, openjdk-6-jdk|default-jdk|sun-java6-jdk, ant, libmysql-java, debconf, libhsqldb-java,ant-contrib,liblog4j1.2-java,libcommons-net2-java (>= 2.2),libcommons-dbcp-java (>= 1.2), libgnumail-java, libcommons-pool-java (>= 1.5), libgnujaf-java, libjgoodies-forms-java (>= 1.2), liboro-java (>= 2.0),libregexp-java (>= 1.4),libjcommon-java (>= 1.0),libjsch-java (>= 0.1.42), libjdom1-java (>= 1.1),junit4,libsaxonb-java (>= 0.9), libcommons-cli-java, libcommons-codec-java, libcommons-httpclient-java, libcommons-logging-java,libjets3t-java, perl, mysql-server Suggests: ncbi-tools-bin, blast2 Description: Biological banks updater BioMAJ downloads remote data banks, check their status and apply transformation workflows, with consistent state,to provide ready-to-use data to biologists and bioinformaticians. For example, it can transform original fasta files to blast indexes. It is very flexible and post-processes can be extended very easily. Package: biomaj-properties Architecture: all Depends: ${misc:Depends} Description: bank properties file examples This package contains a set of bank properties that can be used as examples for biomaj. It contains many existing banks descriptions with or without workflows to transform data. Some files may required additional programs for post processes (blast..).
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