Hi Andreas, Turns out that it is possible to use args4j 2.33 unchanged. I've just committed the according changes to the git repository. All the best, Bernd On 09/20/2018 04:21 PM, Andreas Tille wrote: > Hi again, > > for the moment I ignored the issue of using the private interface I > wrote yesterday and tried to build the Java code. Unfortunately there > is another issue which is hopefully not as hard to solve. In your > download tarball you are shipping > > libs/prod/cisd-args4j-9.11.2*.jar > > (fortunately for my purpose also an archive including the sources > which I might be able to use for the packaging. For the Debian > packaging we can not rely on binary JARs and thus I need to remove > these and need to rebuild from source. However, I was instead > considering to use the Debian packaged args4j 2.33[1] which failed > due to the undefined attribute longName. > > Before I now start to include the cisd-args4j fork of args4j: Do > you see any chance to merge your changes into official args4j and > use the official project? > > Kind regards and thanks for your patience to help me with the > Debian packaging > > Andreas. > > [1] https://salsa.debian.org/med-team/libsis-jhdf5-java/blob/use_gradle/debian/patches/use_debian_packaged_args4j.patch > > > On Wed, Sep 19, 2018 at 01:00:16PM +0200, Andreas Tille wrote: >> Hi Bernd, >> >> On Wed, Sep 19, 2018 at 09:29:42AM +0200, Bernd Rinn wrote: >>> >>> - This fix is in commit 331b8cc (August 21st). >> >> This really helped me to upload libsis-base now. Thanks a lot. >> >> Now I tried to build jhdf5 and was running into: >> >> ... >> In file included from h5VLStrHelperImp.c:19: >> jni/h5jni.h:23:10: fatal error: H5private.h: No such file or directory >> #include "H5private.h" >> ^~~~~~~~~~~~~ >> compilation terminated. >> In file included from h5fHelperImp.c:20: >> jni/h5jni.h:23:10: fatal error: H5private.h: No such file or directory >> #include "H5private.h" >> ^~~~~~~~~~~~~ >> compilation terminated. >> In file included from h5lHelperImp.c:19: >> jni/h5jni.h:23:10: fatal error: H5private.h: No such file or directory >> #include "H5private.h" >> ^~~~~~~~~~~~~ >> compilation terminated. >> ... >> >> H5private.h is as the name said private to the hdf5 library and its >> definitions should not be used in stable interfaces. Did you discussed >> with the hdf5 developers to move the definitions you need to a public >> interface? >> >> Kind regards >> >> Andreas. > -- Dr. Bernd Rinn Head Scientific IT Services ETH Zurich IT Services SIB Swiss Institute of Bioinformatics Weinbergstr. 11 (WEC D 19), 8092 Zürich, Switzerland, +41 44 632 0608 Mattenstr. 26 (BSB 1.01), 4058 Basel, Switzerland, +41 61 387 3130
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