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Re: [Debian-med-packaging] Bug#814875: libsis-jhdf5-java: FTBFS: jni.h:45:20: fatal error: jni_md.h: No such file or directory



I've attached a patch
You'll need to make use of the `jvm_includes` variable that /usr/share/java/java_defaults.mk defines. 
On Wed, Feb 17, 2016 at 10:03 PM Andreas Tille <andreas@an3as.eu> wrote:
Sorry, but do you have a better hint for me since my attempt below did
not change anything?

Kind regards

      Andreas.

On Tue, Feb 16, 2016 at 01:42:29PM +0100, Andreas Tille wrote:
> On Tue, Feb 16, 2016 at 11:44:20AM +0100, Emmanuel Bourg wrote:
> > Le 16/02/2016 11:19, Andreas Tille a écrit :
> >
> > > I wonder whether this might be a missing symlink or so inside
> > > openjdk-8-jdk?
> >
> > openjdk-8 changed some symlinks (see #760301). There is a make fragment
> > available in /usr/share/java/java_defaults.mk defining the right include
> > option for the current JDK.
>
> In case you wanted to provide a hint to do
>
> diff --git a/debian/rules b/debian/rules
> index 86df809..57139da 100755
> --- a/debian/rules
> +++ b/debian/rules
> @@ -8,7 +8,7 @@ export TESTCLASSPATH=/usr/share/java/junit4.jar:/usr/share/java/testng.jar:/usr/
>
>  DPKG_EXPORT_BUILDFLAGS = 1
>  include /usr/share/dpkg/buildflags.mk
> -
> +include /usr/share/java/java_defaults.mk
>
>  %:
>         dh $@ --with javahelper
>
>
> I need to admit this does not change the situation.  Any more precise
> hint?
>
> Kind regards
>
>       Andreas.
>
> --
> http://fam-tille.de
>
>

--
http://fam-tille.de

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--
Michael R. Crusoe     CWL Community Engineer     crusoe@ucdavis.edu
Common Workflow Language project    University of California, Davis
https://impactstory.org/MichaelRCrusoe http://twitter.com/biocrusoe

Attachment: libsis-jhdf5-java.patch
Description: Binary data


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