Help with java package (beast-mcmc) needed

[Andreas Tille <andreas@an3as.eu>]

Hi,

I tried building a package from beast and uploaded for simlicity this
stuff to

    http://people.debian.org/~tille/packages/beast-mcmc-help-wanted/

It contains six executable files in /usr/bin.  Three of them are
starting nicely.  These are  beast-mcmc, beauti and loganalyser.
However, the other three executables are failing for a reason I do
not understand:

$ logcombiner 
Exception in thread "main" java.lang.NoClassDefFoundError: jam/console/ConsoleApplication
        at dr.app.tools.LogCombiner.main(Unknown Source)
Caused by: java.lang.ClassNotFoundException: jam.console.ConsoleApplication
        at java.net.URLClassLoader$1.run(URLClassLoader.java:217)
        at java.security.AccessController.doPrivileged(Native Method)
        at java.net.URLClassLoader.findClass(URLClassLoader.java:205)
        at java.lang.ClassLoader.loadClass(ClassLoader.java:321)
        at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:294)
        at java.lang.ClassLoader.loadClass(ClassLoader.java:266)
        ... 1 more

The executable treeannotator fails with the very same error message
and for treestat I get:

$ treestat 
Exception in thread "main" java.lang.NoClassDefFoundError: jam/framework/SingleDocApplication
        at java.lang.ClassLoader.defineClass1(Native Method)
        at java.lang.ClassLoader.defineClass(ClassLoader.java:634)
        ...

I checked that /usr/share/java/jam.jar is installed and contains the
relevant classes.  Any idea what might went wrong here?

Kind regards

         Andreas.

-- 
http://fam-tille.de