Re: Bug#892222: seqan2: FTBFS on hppa: app_test_seqan_tcoffee fails on 2trx.mlcs.fasta
Hi Aaron,
On 2018-03-06 6:00 PM, Aaron M. Ucko wrote:
Source: seqan2
Version: 2.4.0+dfsg-8
Severity: normal
Tags: upstream
User: debian-hppa@lists.debian.org
Usertags: hppa
Greetings.
Builds of seqan2 for hppa (admittedly not a release architecture) have
been failing lately, per the below excerpts from [1].
Could you please take a look?
Yes, I have looked at the build results but it wasn't clear to me how to
debug the test failure.
Thanks!
[1] https://buildd.debian.org/status/fetch.php?pkg=seqan2&arch=hppa&ver=2.4.0%2Bdfsg-8&stamp=1519074087&raw=0
----------------------------------------------------------------------
392/401 Test #395: app_test_seqan_tcoffee ............................................................***Failed 20.75 sec
Comparing /<<BUILDDIR>>/seqan2-2.4.0+dfsg/apps/seqan_tcoffee/tests/2trx.mlcs.fasta against /tmp/tmp1bkmRo/2trx.mlcs.fasta
---
+++
@@ -1,24 +1,24 @@
>1thx
-AE-----QPVL---V------YFWA-----S--WCGPCQ---LM---SP----LIN--LA
-ANT-YSD-R---L---KV------V--KLE-----IDP------NPTTVKKYK--VE---
-----G--------V-PA----------LRL--V-K-GEQILD-S----TE----------
------G--V-----------IS------K------DKLLSFL----DTH------LN---
-------
+AE-----QPVL---V------YFWA-----S--WCGPCQL-MS--PLINLAANTY---SD
+-R---L---KV---VK--L-----EI--DPNPTTVKK----YK-----------V-----
+-----E----G-------------V-PA-LRL--V-K---G----E---Q-ILDSTE---
+-----G--V----I-----SK-------DKLLSF-------------LD---TH---LN-
+--------
When I look at the above, it appears that the character ordering is the
same as in
the expected sequence but the spacing is different.
I know nothing about seqan2. So, if you have a suggestion as to what
might cause
the above, let me know and I'll take a look.
Helge Deller can provide access to a development system if necessary.
Regards,
Dave Anglin
--
John David Anglin dave.anglin@bell.net
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