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Bug#954272: slurmd: SLURM not working with OpenMPI

Hello Gennaro,

On 2020-03-24 00:54, Gennaro Oliva wrote:
Hi Lars,

On Thu, Mar 19, 2020 at 03:16:15PM +0100, Lars Veldscholte wrote:
A simple test like `srun hostname` works, even on multiple cores. However, when trying to use MPI, it crashes with the following error message:

*** An error occurred in MPI_Init
*** on a NULL communicator
*** MPI_ERRORS_ARE_FATAL (processes in this communicator will now abort,
***    and potentially your MPI job)

This happens even in the most simple "Hello World" case, as long as the program is MPI-enabled.

I am trying to use OpenMPI (4.0.2) from the Debian repositories. `srun --mpi list` returns:

srun: MPI types are...
srun: openmpi
srun: pmi2
srun: none

I have tried all options, but the result is the same in all cases.

Maybe this is user error, as this is my first time setting up SLURM, but I have not been able to find any possible causes/solutions and I am kind of stuck at this point.

I don't know why srun doesn't execute openmpi directly, and I'll try to
investigate this issue but as a workaround you can use both sbatch and
salloc as in [1]:

salloc -n 4 mpirun mympiprogram ...


sbatch -n 4 mympiprogram.sh

where mympiprogram.sh is something like:

mpirun mympiprogram ...

Notice you don't need to specify the number of processes to mpirun, as
it takes it from SLURM.

[1] https://www.open-mpi.org/faq/?category=slurm

Best regards,

Thanks a lot, this seems to be working!

I hadn't realised that you could simply use mpirun instead of srun inside salloc/sbatch.



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