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Bug#643852: marked as done (mafft: FTBFS on ia64: partQalignmm.c:210:1: internal compiler error: in code_motion_path_driver, at sel-sched.c:6575)

Your message dated Fri, 21 Aug 2015 13:43:08 +0000
with message-id <[🔎] E1ZSmb6-0004jv-26@franck.debian.org>
and subject line Bug#796274: Removed package(s) from unstable
has caused the Debian Bug report #643852,
regarding mafft: FTBFS on ia64: partQalignmm.c:210:1: internal compiler error: in code_motion_path_driver, at sel-sched.c:6575
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

(NB: If you are a system administrator and have no idea what this
message is talking about, this may indicate a serious mail system
misconfiguration somewhere. Please contact owner@bugs.debian.org
immediately.)


-- 
643852: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=643852
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: gcc-4.6
Version: 4.6.1-9
Severity: normal
Affects: mafft
Usertags: unige.ch-jmlab

Hi there!

While looking if it would be possible to backport mafft to squeeze I
discovered that mafft FTBFS on ia64 [1] and I could reproduce it on
merulo.d.o [2], from where the output and attached file come.  Given
that is seems to be a bug in gcc, reporting to this latter package (with
the version available on the sid dchroot on merulo.d.o) and adding the
Affects: to the former (and cc:ing its maintainer).

--8<---------------cut here---------------start------------->8---
dpkg-buildpackage -rfakeroot -D -us -uc
dpkg-buildpackage: dpkg-buildflags (origin: vendor): CFLAGS = -g -O2 -D_FORTIFY_SOURCE=2 -Wformat -Wformat-security -Werror=format-security
dpkg-buildpackage: dpkg-buildflags (origin: vendor): CPPFLAGS = 
dpkg-buildpackage: dpkg-buildflags (origin: vendor): CXXFLAGS = -g -O2 -D_FORTIFY_SOURCE=2 -Wformat -Wformat-security -Werror=format-security
dpkg-buildpackage: dpkg-buildflags (origin: vendor): FFLAGS = -g -O2
dpkg-buildpackage: dpkg-buildflags (origin: vendor): LDFLAGS = 
dpkg-buildpackage: source package mafft
dpkg-buildpackage: source version 6.860-1
[...]
make[1]: Entering directory `/home/gismo/mafft-6.860'
/usr/bin/make -C core PREFIX=/usr/lib/mafft ENABLE_MULTITHREAD=-Denablemultithread LIBDIR=/usr/lib/mafft/lib/mafft
make[2]: Entering directory `/home/gismo/mafft-6.860/core'
gcc  -Denablemultithread -O3 -c mtxutl.c
gcc  -Denablemultithread -O3 -c io.c
gcc  -Denablemultithread -O3 -c mltaln9.c
gcc  -Denablemultithread -O3 -c tddis.c
gcc  -Denablemultithread -O3 -c constants.c
gcc  -Denablemultithread -O3 -c nj.c
gcc  -Denablemultithread -O3 -c partQalignmm.c  
partQalignmm.c: In function 'part_imp_match_init_strictQ':
partQalignmm.c:210:1: internal compiler error: in code_motion_path_driver, at sel-sched.c:6575
Please submit a full bug report,
with preprocessed source if appropriate.
See <file:///usr/share/doc/gcc-4.6/README.Bugs> for instructions.
Preprocessed source stored into /tmp/ccOGbQFN.out file, please attach this to your bugreport.
make[2]: *** [partQalignmm.o] Error 1
make[2]: Leaving directory `/home/gismo/mafft-6.860/core'
make[1]: *** [override_dh_auto_build] Error 2
make[1]: Leaving directory `/home/gismo/mafft-6.860'
make: *** [build] Error 2
dpkg-buildpackage: error: debian/rules build gave error exit status 2
--8<---------------cut here---------------end--------------->8---

[1] <https://buildd.debian.org/status/fetch.php?pkg=mafft&arch=ia64&ver=6.860-1&stamp=1316327156>
[2] <http://db.debian.org/machines.cgi?host=merulo>

Thx, bye,
Gismo / Luca

Attachment: ccOGbQFN.out.gz
Description: Binary data

Attachment: pgpw6o4ch7WKH.pgp
Description: PGP signature


--- End Message ---
--- Begin Message --- 
Version: 4.6.4-7+rm

Dear submitter,

as the package gcc-4.6 has just been removed from the Debian archive
unstable we hereby close the associated bug reports.  We are sorry
that we couldn't deal with your issue properly.

For details on the removal, please see https://bugs.debian.org/796274

The version of this package that was in Debian prior to this removal
can still be found using http://snapshot.debian.org/.

This message was generated automatically; if you believe that there is
a problem with it please contact the archive administrators by mailing
ftpmaster@ftp-master.debian.org.

Debian distribution maintenance software
pp.
Scott Kitterman (the ftpmaster behind the curtain)

--- End Message ---
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