Bug#1110232: ITP: python-isovar -- determines mutant protein subsequences around mutations from cancer RNAseq data

[Steffen Moeller <moeller@debian.org>]

Package: wnpp
Severity: wishlist
Owner: Steffen Moeller <moeller@debian.org>
X-Debbugs-Cc: debian-devel@lists.debian.org, moeller@debian.org

* Package name    : python-isovar
  Version         : 0.7.0
* URL             : https://github.com/openvax/isovar
* License         : Apache-2.0
  Programming Lang: Python
  Description     : determines mutant protein subsequences around mutations from cancer RNAseq data


 Isovar determines mutant protein subsequences around mutations from
 cancer RNAseq data.
 .
Isovar works by:
  * collecting RNA reads which spanning the location of a variant,
  * filtering the RNA reads to those which support the mutation,
  * assembling mutant reads into longer coding sequences,
  * matching mutant coding sequences against reference annotated reading
    frames, and
  * translating coding sequences determined directly from RNA into
  * mutant
    protein sequences.
 .
 The assembled coding sequences may incorporate proximal (germline and
 somatic) variants, along with any splicing alterations which occur due
 to modified splice signals.

The project will be team-maintained at https://salsa.debian.org/med-team/python-isovar .