Package: wnpp Severity: wishlist Owner: Étienne Mollier <emollier@debian.org> X-Debbugs-Cc: debian-devel@lists.debian.org * Package name : abpoa Version : 1.4.1 Upstream Author : Yan Gao <gaoy1@chop.edu> * URL : https://github.com/yangao07/abPOA * License : Expat Programming Lang: C, Python3 Description : adaptive banded Partial Order Alignment abPOA is an extended version of Partial Order Alignment (POA) that performs adaptive banded dynamic programming (DP) with an SIMD implementation. abPOA can perform multiple sequence alignment (MSA) on a set of input sequences and generate a consensus sequence by applying the heaviest bundling algorithm to the final alignment graph. . abPOA can generate high-quality consensus sequences from error-prone long reads and offer significant speed improvement over existing tools. . abPOA supports three alignment modes (global, local, extension) and flexible scoring schemes that allow linear, affine and convex gap penalties. It right now supports SSE2/SSE4.1/AVX2 vectorization. This package is necessary as a new dependency for newer versions of the parsnp package, and may be useful in other areas. I plan to maintain it within the Debian Med team. A stub of packaging repository is already available on Salsa[1]. [1]: https://salsa.debian.org/med-team/abpoa Have a nice day, :) -- Étienne Mollier <emollier@emlwks999.eu> Fingerprint: 8f91 b227 c7d6 f2b1 948c 8236 793c f67e 8f0d 11da Sent from /dev/pts/9, please excuse my verbosity. On air: Cairo (US) - The Fuse
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