Package: wnpp
Severity: wishlist
Owner: Nilesh Patra <npatra974@gmail.com>
X-Debbugs-CC: debian-devel@lists.debian.org
* Package name : ggd-utils
Version : 0.0.7+ds
Upstream Author : gogetdata
* URL : github.com/gogetdata/ggd-utils
* License : Expat
Programming Lang: Golang
Description : programs for use in ggd
Takes a genome file and (currently) a .vcf.gz or
a .bed.gz and checks that:
.
* a .tbi is present
* the VCF has ""##fileformat=VCF" as the first
line
* the VCF has a #CHROM header
* the chromosome are in the order specified by
the genome file (and present)
* the positions are sorted
* the positions are <= the chromosome lengths
defined in the genome file.
.
As a result, any new genome going into GGD will have
a .genome file that will dictate the sort order
and presence or absence of the 'chr' prefix for chromosomes
I shall maintain this package.