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Bug#971870: ITP: sepp -- methods using ensembles of Hidden Markov Models (HMM)



Package: wnpp
Severity: wishlist
Owner: Debian-med project <debian-med@lists.debian.org>
X-Debbugs-Cc: debian-devel@lists.debian.org, debian-med@lists.debian.org

* Package name    : sepp
  Version         : 4.3.10
  Upstream Author : Siavash Mirarab <smirarab@gmail.com>
* URL             : https://github.com/smirarab/sepp/
* License         : GPL-3
  Programming Lang: Python, Java
  Description     : methods using ensembles of Hidden Markov Models (HMM)

The tools SEPP and TIPP implementing these methods use ensembles of Hidden
Markov Models (HMMs) in different ways, each focusing on a different problem.

SEPP stands for "SATe-enabled Phylogenetic Placement", and addresses the
problem of phylogenetic placement of short reads into reference
alignments and trees.

TIPP stands for "Taxonomic Identification and Phylogenetic Profiling",
and addresses the problem of taxonomic identification and abundance
profiling of metagenomic data.

This package is useful to treat genomic data and will be maintained by
Debian-med.


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