[Date Prev][Date Next] [Thread Prev][Thread Next] [Date Index] [Thread Index]

Bug#878962: ITP: hinge -- long read genome assembler based on hinging

Package: wnpp
Severity: wishlist
Owner: Debian Med Team <debian-med-packaging@lists.alioth.debian.org>

* Package name    : hinge
  Version         : 0.5
  Upstream Author : Govinda Kamath,
                    Fei Xia,
		    Ilan Shomorony,
		    Thomas Courtade, and
		    David Tse
* URL             : https://github.com/HingeAssembler/HINGE
* License         : BSD
  Programming Lang: C++, Python
  Description     : long read genome assembler based on hinging

 HINGE is a genome assembler that seeks to achieve optimal repeat resolution
 by distinguishing repeats that can be resolved given the data from those that
 cannot. This is accomplished by adding “hinges” to reads for constructing an
 overlap graph where only unresolvable repeats are merged. As a result, HINGE
 combines the error resilience of overlap-based assemblers with
 repeat-resolution capabilities of de Bruijn graph assemblers.

This will be maintained by the Debian Med team.

Reply to: