Bug#875555: ITP: phast -- phylogenetic analysis with space/time models
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>
* Package name : phast
Version : 1.4
Upstream Author : Ritika Ramani <rramani@cshl.edu>
* URL : http://compgen.cshl/edu/phast
* License : BSD
Programming Lang: C
Description : phylogenetic analysis with space/time models
PHAST is a software package for comparative and evolutionary genomics.
It consists of about half a dozen major programs, plus more than a dozen
utilities for manipulating sequence alignments, phylogenetic trees, and
genomic annotations. For the most part, PHAST focuses on two kinds of
applications: the identification of novel functional elements, including
protein-coding exons and evolutionarily conserved sequences; and
statistical phylogenetic modeling, including estimation of model
parameters, detection of signatures of selection, and reconstruction of
ancestral sequences.
.
PHAST does not support phylogeny reconstruction or sequence alignment,
and it is designed for use with DNA sequences only (see Comparison).
Remark: This package will be maintained by the Debian Med team at
https://anonscm.debian.org/git/debian-med/phast.git
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