Bug#831995: ITP: parsnp -- rapid core genome multi-alignment
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>
* Package name : parsnp
Version : 1.2
Upstream Author : Todd J Treangen <treangen@gmail.com>
* URL : https://github.com/marbl/parsnp
* License : BSD
Programming Lang: C, Python
Description : rapid core genome multi-alignment
Parsnp was designed to align the core genome of hundreds to thousands of
bacterial genomes within a few minutes to few hours. Input can be both
draft assemblies and finished genomes, and output includes variant (SNP)
calls, core genome phylogeny and multi-alignments. Parsnp leverages
contextual information provided by multi-alignments surrounding SNP
sites for filtration/cleaning, in addition to existing tools for
recombination detection/filtration and phylogenetic reconstruction.
Remark: This package is maintained by the Debian Med team at
https://anonscm.debian.org/git/debian-med/parsnp.git
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