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Bug#831995: ITP: parsnp -- rapid core genome multi-alignment

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>

* Package name    : parsnp
  Version         : 1.2
  Upstream Author : Todd J Treangen <treangen@gmail.com>
* URL             : https://github.com/marbl/parsnp
* License         : BSD
  Programming Lang: C, Python
  Description     : rapid core genome multi-alignment
 Parsnp was designed to align the core genome of hundreds to thousands of
 bacterial genomes within a few minutes to few hours. Input can be both
 draft assemblies and finished genomes, and output includes variant (SNP)
 calls, core genome phylogeny and multi-alignments. Parsnp leverages
 contextual information provided by multi-alignments surrounding SNP
 sites for filtration/cleaning, in addition to existing tools for
 recombination detection/filtration and phylogenetic reconstruction.

Remark: This package is maintained by the Debian Med team at

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