Bug#806726: ITP: gubbins -- phylogenetic analysis of genome sequences

[Andreas Tille <tille@debian.org>]

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>

* Package name    : gubbins
  Version         : 1.4.3
  Upstream Author : Andrew J. Page <ap13@sanger.ac.uk>
* URL             : https://sanger-pathogens.github.io/gubbins/
* License         : GPL
  Programming Lang: C, Python
  Description     : phylogenetic analysis of genome sequences
 Gubbins supports rapid phylogenetic analysis of large samples of
 recombinant bacterial whole genome sequences.
 .
 Gubbins (Genealogies Unbiased By recomBinations In Nucleotide
 Sequences) is an algorithm that iteratively identifies loci containing
 elevated densities of base substitutions while concurrently constructing
 a phylogeny based on the putative point mutations outside of these
 regions. Simulations demonstrate the algorithm generates highly accurate
 reconstructions under realistic models of short-term bacterial
 evolution, and can be run in only a few hours on alignments of hundreds
 of bacterial genome sequences.