Bug#778489: ITP: jaligner -- implementation of the Smith-Waterman algorithm with Gotoh's improvement

[Michael Crusoe <michael.crusoe@gmail.com>]

Package: wnpp

Severity: wishlist

Owner: Debian Med team <debian-med@lists.debian.org>

X-Debbugs-Cc: debian-devel@lists.debian.org, debian-med@lists.debian.org

* Package name    : jaligner

  Version         : 1.0

  Upstream Author : Ahmed Moustafa <ahmed@users.sf.net>

* URL             : http://jaligner.sf.net

* License         : GPL

  Programming Lang: Java

  Description     : implementation of the Smith-Waterman algorithm with Gotoh's improvement

JAligner is an open source Java implementation of the Smith-Waterman

 algorithm with Gotoh's improvement for biological local pairwise sequence

 alignment with the affine gap penalty model.

jaligner is a dependency of many bioinformatic programs including

trinityrnaseq. The packaging was started by Tim Booth and will be group

maintained by the Debian Med team.