Bug#738551: ITP: giira -- RNA-Seq driven gene finding incorporating ambiguous reads
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>
* Package name : giira
Version : 0.0.20140210
Upstream Author : Franziska Zickmann <ZickmannF@rki.de>
* URL : http://sourceforge.net/projects/giira/
* License : GPLv3
Programming Lang: Java, Python
Description : RNA-Seq driven gene finding incorporating ambiguous reads
GIIRA is a gene prediction method that identifies potential coding
regions exclusively based on the mapping of reads from an RNA-Seq
experiment. It was foremost designed for prokaryotic gene prediction
and is able to resolve genes within the expressed region of an operon.
However, it is also applicable to eukaryotes and predicts exon intron
structures as well as alternative isoforms.
Remark: This package is maintained by the Debian Med team and the
packaging is available at
git://anonscm.debian.org/debian-med/giira.git
It belongs to a set of packages listed at http://www.renard.it/.
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