Bug#734638: ITP: anfo -- Short Read Aligner/Mapper from MPG
Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tille@debian.org>
* Package name : anfo
Version : 0.98
Upstream Author : Udo Stenzel <udo_stenzel@eva.mpg.de>
* URL : https://bioinf.eva.mpg.de/anfo/
* License : GPLv3
Programming Lang: C++
Description : Short Read Aligner/Mapper from MPG
Anfo is a mapper in the spirit of Soap/Maq/Bowtie, but its implementation takes
more after BLAST/BLAT. It's most useful for the alignment of sequencing reads
where the DNA sequence is somehow modified (think ancient DNA or bisulphite
treatment) and/or there is more divergence between sample and reference than
what fast mappers will handle gracefully (say the reference genome is missing
and a related species is used instead).
This package was build for Debian since it is part of BioLinux and the Debian
Med team tries to package all software used in this Ubuntu derivative straight
into Debian. You can find the finished packaging in VCS at
svn://anonscm.debian.org/debian-med/trunk/packages/anfo/trunk/
Reply to: