Bug#537204: ITP: embassy-domsearch -- Extra EMBOSS commands to search for protein domains
Package: wnpp
Severity: wishlist
Owner: Charles Plessy <plessy@debian.org>
Dear all,
15th of July is the traditional EMBOSS release (EMBOSS is a set of command line
tools for molecular biologists). Two satellite packages are already present in
Debian and here is the ITP for a third. Package structure is trivial and upload
will follow shortly. It will not add to my long list of work-in-progress ITPs.
Package name : embassy-domsearch
Version : 0.1.0 (+20980715)
Upstream Author : Jon Ison (jison@ebi.ac.uk) and collaborators.
URL : http://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMSEARCH
License : GPL-2+
Programming Lang: C
Description : Extra EMBOSS commands to search for protein domains
debian/copyright
----------------
Machine-readable license summary, see ‘http://dep.debian.net/deps/dep5/’;.
Name : DOMAINATRIX
Contact : Jon Ison (jison@ebi.ac.uk)
Source : ftp://emboss.open-bio.org/pub/EMBOSS/DOMSEARCH-0.1.0.tar.gz
Copyright: Jon Ison (jison@ebi.ac.uk), Matt Blades, Ranjeeva Ranasinghe.
License: GPL-2+
This package is free software; you can redistribute it and/or modify
it under the terms of the GNU General Public License as published by
the Free Software Foundation; either version 2 of the License, or
(at your option) any later version.
This package is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU General Public License for more details.
You should have received a copy of the GNU General Public License
along with this package; if not, write to the Free Software
Foundation, Inc., 51 Franklin St, Fifth Floor, Boston, MA 02110-1301 USA
On Debian systems, the complete text of the GNU General Public License version 2 can be
found in ‘/usr/share/common-licenses/GPL-2’.
debian/control
--------------
Source: embassy-domsearch
Section: science
Priority: optional
Build-Depends: cdbs, debhelper (>= 7), libajax6-dev, libnucleus6-dev, emboss-lib, libx11-dev, libgd2-xpm-dev
Maintainer: Debian-Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
DM-Upload-Allowed: yes
Uploaders: Charles Plessy <plessy@debian.org>
Vcs-Browser: http://svn.debian.org/wsvn/debian-med/trunk/packages/embassy-domsearch/trunk/?rev=0&sc=0
Vcs-Svn: svn://svn.debian.org/svn/debian-med/trunk/packages/embassy-domsearch/trunk/
Standards-Version: 3.8.2
Homepage: http://emboss.sourceforge.net/apps/cvs/embassy/index.html#DOMSEARCH
Package: embassy-domsearch
Architecture: any
Depends: ${shlibs:Depends}, ${misc:Depends}
Recommends: emboss
Suggests: embassy
Description: Extra EMBOSS commands to search for protein domains
The DOMSEARCH programs were developed by Jon Ison and colleagues at MRC HGMP
for their protein domain research. They are included as an EMBASSY package as
a work in progress.
.
Applications in this DOMSEARCH release are seqfraggle (removes fragment
sequences from DHF files), seqnr (removes redundancy from DHF files), seqsearch
(generates PSI-BLAST hits (DHF file) from a DAF file), seqsort (Remove
ambiguous classified sequences from DHF files) and seqwords (Generates DHF
files from keyword search of UniProt).
I will upload the source package to the debian-med Subversion repository after
I escape from a strange svn bug that crashes my machine when doing ‘svn mv’.
Have a nice day,
--
Charles Plessy
Debian Med packaging team,
http://www.debian.org/devel/debian-med
Tsurumi, Kanagawa, Japan
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