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Bug#500106: ITP: agdbnet -- antigen sequence database software for web-based bacterial typing

Package: wnpp
Severity: wishlist
Owner: Andreas Tille <tillea@rki.de>

* Package name    : agdbnet
  Version         : 1.0.0
  Upstream Author : Keith Jolley <keith.jolley@medawar.ox.ac.uk>
* URL             : http://pubmlst.org/software/database/agdbnet/
* License         : GPL
  Programming Lang: Perl
  Description     : antigen sequence database software for web-based bacterial typing

 AgdbNet facilitates simultaneous BLAST querying of multiple loci using
 either nucleotide or peptide sequences.  Databases are described by XML
 files and can have any number of loci, which may be defined by nucleotide
 and/or peptide sequences. The databases can optionally have integral
 isolate tables so that information about representative isolates can
 be retrieved or they may be configured to query external isolate databases,
 such as those hosted on PubMLST.org.
 The software is used on a number of public bacterial typing databases:
  * Neisseria PorA variable regions (http://neisseria.org/nm/typing/pora/),
    PorB (http://neisseria.org/nm/typing/porb/),
    FetA (http://neisseria.org/nm/typing/feta/)
  * Campylobacter flaA (http://hercules.medawar.ox.ac.uk/flaA/)
  * Streptococcus equi seM (http://pubmlst.org/szooepidemicus/seM/)

The package will be group maintained by the Debian Med packaging
team.  Preliminary packaging stuff is available at


Kind regards


-- System Information:
Debian Release: lenny/sid
  APT prefers testing
  APT policy: (501, 'testing'), (50, 'unstable'), (5, 'experimental')
Architecture: i386 (i686)

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