Bug#406286: ITP: sibsim4 -- align expressed RNA sequences on a DNA template
Package: wnpp
Severity: wishlist
Owner: "Nelson A. de Oliveira" <naoliv@debian.org>
* Package name : sibsim4
Version : 0.14
Upstream Author : Christian Iseli <Christian.Iseli@licr.org>
* URL : http://sibsim4.sourceforge.net/
* License : GNU GPL
Programming Lang: C
Description : align expressed RNA sequences on a DNA template
The SIBsim4 project is based on sim4, which is a program designed to align
an expressed DNA sequence with a genomic sequence, allowing for introns.
SIBsim4 is a fairly extensive rewrite of the original code with the following
goals:
* speed improvement;
* allow large, chromosome scale, DNA sequences to be used;
* provide more detailed output about splice types;
* provide more detailed output about polyA sites;
* misc code cleanups and fixes
-- System Information:
Debian Release: 4.0
APT prefers unstable
APT policy: (500, 'unstable'), (500, 'testing'), (1, 'experimental')
Architecture: i386 (i686)
Shell: /bin/sh linked to /bin/dash
Kernel: Linux 2.6.19-beyond2
Locale: LANG=pt_BR.UTF-8, LC_CTYPE=pt_BR.UTF-8 (charmap=UTF-8)
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