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Bug#378290: ITP: proalign -- Probabilistic multiple alignment program

Package: wnpp
Severity: wishlist
Owner: Charles Plessy <charles-debian-nospam@plessy.org>

  Package name    : proalign
  Version         : 0.5alpha1
  Upstream Author : Ari Löytynoja & Michel C. Milinkovitch
  URL             : http://evol-linux1.ulb.ac.be/ueg/ProAlign/
  License         : (GPL, LGPL, BSD, MIT/X, etc.)
  Description     : Probabilistic multiple alignment program

 ProAlign performs probabilistic sequence alignments using hidden Markov
 models (HMM). It includes a graphical interface (GUI) allowing to (i)
 perform alignments of nucleotide or amino-acid sequences, (ii) view the
 quality of solutions, (iii) filter the unreliable alignment regions and
 (iv) export alignments to other softwares.
 ProAlign uses a progressive method, such that multiple alignment is
 created stepwise by performing pairwise alignments in the nodes of a
 guide tree. Sequences are described with vectors of character
 probabilities, and each pairwise alignment reconstructs the ancestral
 (parent) sequence by computing the probabilities of different
 characters according to an evolutionary model. It has been published in
 Bioinformatics. 2003 Aug 12;19(12):1505-13.
  Homepage: http://evol-linux1.ulb.ac.be/ueg/ProAlign/

-- System Information:
Debian Release: testing/unstable
  APT prefers unstable
  APT policy: (500, 'unstable'), (500, 'testing')
Architecture: powerpc (ppc64)
Shell:  /bin/sh linked to /bin/bash
Kernel: Linux 2.6.16farm
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)

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