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Bug#366321: ITP: amap-align -- Protein multiple alignment by sequence annealing



Package: wnpp
Severity: wishlist
Owner: Charles Plessy <charles-debian-nospam@plessy.org>

  Package name    : amap-align
  Version         : 2.0
  Upstream Author : Ariel Schwartz <sariel@cs.berkeley.edu>
  URL             : http://bio.math.berkeley.edu/amap/download/amap.2.0.tar.gz
  License         : Public domain
  Description     : Protein multiple alignment by sequence annealing

 AMAP is a command line tool to perform multiple alignment of peptidic
 sequences. It utilizes posterior decoding, and a sequence-annealing
 alignment, instead of the traditional progressive alignment method. It
 is the only alignment program that allows to control the sensitivity /
 specificity tradeoff.  It is based on the ProbCons source code, but
 uses alignment metric accuracy and eliminates the consistency
 transformation.
 .
 Homepage: http://bio.math.berkeley.edu/amap/

Amap has of course nothing to do with the amap already packaged for
Debian ( http://packages.debian.org/unstable/net/amap ).


(By the way, I am looking for sponsors for kalign, dialign and
treeviewx, which I have uploaded on Mentors.
http://lists.debian.org/debian-mentors/2006/05/msg00014.html )

-- 
Charles Plessy
Wako, Saitama, Japan



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