Bug#366321: ITP: amap-align -- Protein multiple alignment by sequence annealing
Package: wnpp
Severity: wishlist
Owner: Charles Plessy <charles-debian-nospam@plessy.org>
Package name : amap-align
Version : 2.0
Upstream Author : Ariel Schwartz <sariel@cs.berkeley.edu>
URL : http://bio.math.berkeley.edu/amap/download/amap.2.0.tar.gz
License : Public domain
Description : Protein multiple alignment by sequence annealing
AMAP is a command line tool to perform multiple alignment of peptidic
sequences. It utilizes posterior decoding, and a sequence-annealing
alignment, instead of the traditional progressive alignment method. It
is the only alignment program that allows to control the sensitivity /
specificity tradeoff. It is based on the ProbCons source code, but
uses alignment metric accuracy and eliminates the consistency
transformation.
.
Homepage: http://bio.math.berkeley.edu/amap/
Amap has of course nothing to do with the amap already packaged for
Debian ( http://packages.debian.org/unstable/net/amap ).
(By the way, I am looking for sponsors for kalign, dialign and
treeviewx, which I have uploaded on Mentors.
http://lists.debian.org/debian-mentors/2006/05/msg00014.html )
--
Charles Plessy
Wako, Saitama, Japan
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