Bug#365499: ITP: probcons -- PROBabilistic CONSistency-based multiple sequence alignment
Package: wnpp
Severity: wishlist
Owner: Charles Plessy <charles-debian-nospam@plessy.org>
Package name : probcons
Version : 1.10
Upstream Author : Chuong B. Do <chuongdo@cs.stanford.edu>
URL : http://probcons.stanford.edu/download.html
License : Public Domain
Description : PROBabilistic CONSistency-based multiple sequence alignment
PROBCONS is a tool for generating multiple alignments of protein
sequences. Using a combination of probabilistic modeling and
consistency-based alignment techniques, PROBCONS has achieved the
highest accuracies of all alignment methods to date. On the BAliBASE
benchmark alignment database, alignments produced by PROBCONS show
statistically significant improvement over current programs, containing
an average of 7% more correctly aligned columns than those of T-Coffee,
11% more correctly aligned columns than those of CLUSTAL W, and 14%
more correctly aligned columns than those of DIALIGN. Probcons is
published in Do, C.B., Mahabhashyam, M.S.P., Brudno, M., and
Batzoglou, S. 2005. Genome Research 15: 330-340.
.
Homepage: http://probcons.stanford.edu/
-- System Information:
Debian Release: testing/unstable
APT prefers testing
APT policy: (500, 'testing')
Architecture: powerpc (ppc64)
Shell: /bin/sh linked to /bin/bash
Kernel: Linux 2.6.16farm
Locale: LANG=fr_FR.UTF-8, LC_CTYPE=fr_FR.UTF-8 (charmap=UTF-8)
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