Bug#291379: ITP: tigr-glimmerhmm -- [Biology] gene finder for eukaryotic genomes

[Steffen Moeller <moeller@pzr.uni-rostock.de>]

Package: wnpp
Severity: wishlist


* Package name    : tigr-glimmerhmm
  Version         : 2.0.2
  Upstream Author : Mihaela Pertea <mpertea@tigr.org>
* URL             : http://www.tigr.org/software/glimmer/
* License         : Artistic
  Description     : [Biology] gene finder for eukaryotic genomes

 GlimmerHMM is a new gene finder based on a Generalized Hidden Markov
 Model (GHMM). Although the gene finder conforms to the overall
 mathematical framework of a GHMM, additionally it incorporates splice
 site models adapted from the GeneSplicer program and a decision tree
 adapted from GlimmerM. It also utilizes Interpolated Markov Models for
 the coding and noncoding models . Currently, GlimmerHMM's GHMM structure
 includes introns of each phase, intergenic regions, and four types of
 exons (initial, internal, final, and single).
 .
 GlimmerHMM has been trained on several species including Arabidopsis
 thaliana, Coccidioides species, Cryptococcus neoformans, and Brugia
 malayi.
 .
  Homepage: http://www.tigr.org/software/GlimmerHMM/

A package is a available at
http://bioinformatics.pzr.uni-rostock.de/~moeller/debian/tigr-glimmerhmm/

Cheers,

Steffen Moeller