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Bug#291379: ITP: tigr-glimmerhmm -- [Biology] gene finder for eukaryotic genomes

Package: wnpp
Severity: wishlist

* Package name    : tigr-glimmerhmm
  Version         : 2.0.2
  Upstream Author : Mihaela Pertea <mpertea@tigr.org>
* URL             : http://www.tigr.org/software/glimmer/
* License         : Artistic
  Description     : [Biology] gene finder for eukaryotic genomes

 GlimmerHMM is a new gene finder based on a Generalized Hidden Markov
 Model (GHMM). Although the gene finder conforms to the overall
 mathematical framework of a GHMM, additionally it incorporates splice
 site models adapted from the GeneSplicer program and a decision tree
 adapted from GlimmerM. It also utilizes Interpolated Markov Models for
 the coding and noncoding models . Currently, GlimmerHMM's GHMM structure
 includes introns of each phase, intergenic regions, and four types of
 exons (initial, internal, final, and single).
 GlimmerHMM has been trained on several species including Arabidopsis
 thaliana, Coccidioides species, Cryptococcus neoformans, and Brugia
  Homepage: http://www.tigr.org/software/GlimmerHMM/

A package is a available at


Steffen Moeller

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