Accepted gromacs 3.3.3~pre1-1 (source all i386)
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Hash: SHA1
Format: 1.7
Date: Wed, 13 Feb 2008 15:01:50 -0800
Source: gromacs
Binary: gromacs-openmpi gromacs gromacs-lam gromacs-dev gromacs-mpich gromacs-doc
Architecture: source all i386
Version: 3.3.3~pre1-1
Distribution: unstable
Urgency: low
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Changed-By: Nicholas Breen <nbreen@ofb.net>
Description:
gromacs - Molecular dynamics simulator, with building and analysis tools
gromacs-dev - GROMACS molecular dynamics sim, development kit
gromacs-doc - GROMACS molecular dynamics sim, documentation
gromacs-lam - Molecular dynamics sim, binaries for LAM-MPI parallelization
gromacs-mpich - Molecular dynamics sim, binaries for MPICH parallelization
gromacs-openmpi - Molecular dynamics sim, binaries for OpenMPI parallelization
Changes:
gromacs (3.3.3~pre1-1) unstable; urgency=low
.
[ Nicholas Breen ]
* New upstream release.
- Remove obsolete patches now incorporated upstream:
50_xtcio_double_range_checking, 51_180_degree_angle,
52_pme_spline, 53_pbc_compiler.
* debian/rules:
- Clean up patch syntax to prevent double compilations.
- Add .NOTPARALLEL target to prevent the various MPI builds from
compiling on the same source tree simultaneously, while still
allowing -j options to be passed to sublevel targets.
- Improve DEB_BUILD_OPTIONS=parallel=X handling, now in line with
the example proposed for policy.
- Disable FORTRAN inner loops for gromacs-openmpi on alpha. This
is a temporary workaround to avoid lingering linking problems
regarding libmpi.so and the update-alternatives system.
- Add support for DEB_BUILD_OPTIONS=noopt.
- Additional rewrite work (see below): use new format for build
commands, but split for individual MPI implementations.
- Run autotools between patch and configuration steps.
- New format for MPI library suffix configuration.
* debian/control:
- Add versioned Build-Depends on libmpich1.0-dev for its
g77 -> gfortran transition.
- Add Build-Depends on autoconf and automake, and Build-Conflicts
on autoconf2.13, to support updated mpisuffix patch.
- Downgrade gromacs-doc Depends: on gromacs to a Recommends:, as -doc
now ships its own copyright file.
* debian/patches/04_autoconf_mpisuffix.dpatch: Apply dleidert's improved
patch to allow arbitrary overrides of LIBSUFFIX; reduce patch to only
the directly changed code in configure.ac, and add an invocation of
autotools during the build process rather than patching configure
itself directly.
* debian/gromacs-{doc,dev}.preinst: Remove symlinks for package doc
directories on upgrade, in order to replace them with actual directories.
.
[ Daniel Leidert ]
* debian/control (Suggests): Fixed a debcheck issue - gromacs-openmpi should
only be suggested on supported architectures.
* debian/copyright: Added copyright information to satisfy lintian.
* debian/gromacs-doc.doc-base (Section): Fixed accordingly to menu policy.
(Format): Fixed path to HTML files.
* debian/rules: Major rewrite. Changes/improvements include:
- drop dpatch target definitions in favour of dpatch.make
- put all configure flags to the top of the file
- moved all configure related commands into configure-stamp
- moved all build related commands into build-stamp
- moved all install related commands into separate install targets
- configure and build in sub-directories to avoid $(MAKE) clean calls
- clean target removes build/ instead to run clean/distclean
- replaced ln with dh_link and gzip with dh_installman
- adjusted target requirements for binary* and install*
- install a /usr/share/doc/$package directory for gromacs-doc and -dev
too; put the HTML into the -doc documentation directory; add links to
the HTML directory for the gromacs and the -dev package pointing to the
-doc directory
- fixed .PHONY target for above
* debian/watch: Added pre-release version handling.
Files:
32ee1a2d91935dbc4dda8cca6d303837 1256 science extra gromacs_3.3.3~pre1-1.dsc
e56123d40cc4d20f1af53a516d610fc8 8018317 science extra gromacs_3.3.3~pre1.orig.tar.gz
4a19993b02e1b3e620b4eeaf1797de6f 1717383 science extra gromacs_3.3.3~pre1-1.diff.gz
f2897208ff62f80fc46c33c3f18a4e52 2132558 doc extra gromacs-doc_3.3.3~pre1-1_all.deb
842ba4ed9b343aa732adbcd55100bc48 6399368 science extra gromacs_3.3.3~pre1-1_i386.deb
e372dcc72b94a5c618b1e17b13424834 14269612 devel extra gromacs-dev_3.3.3~pre1-1_i386.deb
2e80f1c9882ca22a346d17380d6e16bc 3321026 science extra gromacs-mpich_3.3.3~pre1-1_i386.deb
98c552978884c8d434b9c46fda875951 2820166 science extra gromacs-lam_3.3.3~pre1-1_i386.deb
9d142f30d882aef306d530ddeae95bbf 2823184 science extra gromacs-openmpi_3.3.3~pre1-1_i386.deb
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Accepted:
gromacs-dev_3.3.3~pre1-1_i386.deb
to pool/main/g/gromacs/gromacs-dev_3.3.3~pre1-1_i386.deb
gromacs-doc_3.3.3~pre1-1_all.deb
to pool/main/g/gromacs/gromacs-doc_3.3.3~pre1-1_all.deb
gromacs-lam_3.3.3~pre1-1_i386.deb
to pool/main/g/gromacs/gromacs-lam_3.3.3~pre1-1_i386.deb
gromacs-mpich_3.3.3~pre1-1_i386.deb
to pool/main/g/gromacs/gromacs-mpich_3.3.3~pre1-1_i386.deb
gromacs-openmpi_3.3.3~pre1-1_i386.deb
to pool/main/g/gromacs/gromacs-openmpi_3.3.3~pre1-1_i386.deb
gromacs_3.3.3~pre1-1.diff.gz
to pool/main/g/gromacs/gromacs_3.3.3~pre1-1.diff.gz
gromacs_3.3.3~pre1-1.dsc
to pool/main/g/gromacs/gromacs_3.3.3~pre1-1.dsc
gromacs_3.3.3~pre1-1_i386.deb
to pool/main/g/gromacs/gromacs_3.3.3~pre1-1_i386.deb
gromacs_3.3.3~pre1.orig.tar.gz
to pool/main/g/gromacs/gromacs_3.3.3~pre1.orig.tar.gz
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