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Bug#1006376: blasr: autopkgtest regression: Segmentation fault

Source: blasr
Version: 5.3.5+dfsg-2
X-Debbugs-CC: debian-ci@lists.debian.org
Severity: serious
User: debian-ci@lists.debian.org
Usertags: regression

Dear maintainer(s),

With a recent upload of blasr the autopkgtest of blasr fails in testing when that autopkgtest is run with the binary packages of blasr from unstable. It passes when run with only packages from testing. In tabular form:

                       pass            fail
blasr                  from testing    5.3.5+dfsg-2
all others             from testing    from testing

I copied some of the output at the bottom of this report.

Currently this regression is blocking the migration to testing [1]. Can you please investigate the situation and fix it?

More information about this bug and the reason for filing it can be found on


[1] https://qa.debian.org/excuses.php?package=blasr


[INFO] 2022-02-24T10:13:15 [blasr] started.
/tmp/autopkgtest-lxc.wkwsu473/downtmp/build.ehO/src/debian/tests/run-unit-test: line 16: 1681 Segmentation fault blasr query.fasta ref.fa --sam --out alignment.sam
autopkgtest [10:13:15]: test run-unit-test

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