Source: plink2 Version: 2.00~a3-211011+dfsg-1 X-Debbugs-CC: debian-ci@lists.debian.org Severity: serious User: debian-ci@lists.debian.org Usertags: regression Dear maintainer(s),With a recent upload of plink2 the autopkgtest of plink2 fails in testing when that autopkgtest is run with the binary packages of plink2 from unstable. It passes when run with only packages from testing. In tabular form:
pass fail plink2 from testing 2.00~a3-211011+dfsg-1 all others from testing from testing I copied some of the output at the bottom of this report.Currently this regression is blocking the migration to testing [1]. Can you please investigate the situation and fix it?
More information about this bug and the reason for filing it can be found on https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation Paul [1] https://qa.debian.org/excuses.php?package=plink2 https://ci.debian.net/data/autopkgtest/testing/amd64/p/plink2/17088127/log.gzPLINK v2.00a3 SSE4.2 (11 Oct 2021) www.cog-genomics.org/plink/2.0/ (C) 2005-2021 Shaun Purcell, Christopher Chang GNU General Public License v3
Logging to tmp_data.log. Options in effect: --dummy 33 65537 0.1 dosage-freq=0.1 --out tmp_data Start time: Sun Nov 28 11:11:17 2021 257840 MiB RAM detected; reserving 128920 MiB for main workspace. Using up to 48 threads (change this with --threads). --dummy: 65k variants written.Dummy data (33 samples, 65537 SNPs) written to tmp_data.pgen + tmp_data.pvar +
tmp_data.psam . End time: Sun Nov 28 11:11:17 2021 /usr/bin/plink2: line 8: 1566 Segmentation fault "${cmd}" "$@" autopkgtest [11:11:17]: test run-sample-analysis
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