Source: minimap2, nanolyse Control: found -1 minimap2/2.22+dfsg-1 Control: found -1 nanolyse/1.2.0-2 Severity: serious Tags: sid bookworm X-Debbugs-CC: debian-ci@lists.debian.org User: debian-ci@lists.debian.org Usertags: breaks needs-update Dear maintainer(s), With a recent upload of minimap2 the autopkgtest of nanolyse fails in testing when that autopkgtest is run with the binary packages of minimap2 from unstable. It passes when run with only packages from testing. In tabular form: pass fail minimap2 from testing 2.22+dfsg-1 nanolyse from testing 1.2.0-2 all others from testing from testing I copied some of the output at the bottom of this report. Currently this regression is blocking the migration of minimap2 to testing [1]. Due to the nature of this issue, I filed this bug report against both packages. Can you please investigate the situation and reassign the bug to the right package? More information about this bug and the reason for filing it can be found on https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation Paul [1] https://qa.debian.org/excuses.php?package=minimap2 https://ci.debian.net/data/autopkgtest/testing/i386/n/nanolyse/16256284/log.gz cat: paired_reads.fastq: No such file or directory Traceback (most recent call last): File "/usr/bin/NanoLyse", line 33, in <module> sys.exit(load_entry_point('NanoLyse==1.2.0', 'console_scripts', 'NanoLyse')()) File "/usr/bin/NanoLyse", line 25, in importlib_load_entry_point return next(matches).load() File "/usr/lib/python3.9/importlib/metadata.py", line 77, in load module = import_module(match.group('module')) File "/usr/lib/python3.9/importlib/__init__.py", line 127, in import_module return _bootstrap._gcd_import(name[level:], package, level) File "<frozen importlib._bootstrap>", line 1030, in _gcd_import File "<frozen importlib._bootstrap>", line 1007, in _find_and_load File "<frozen importlib._bootstrap>", line 986, in _find_and_load_unlocked File "<frozen importlib._bootstrap>", line 680, in _load_unlocked File "<frozen importlib._bootstrap_external>", line 850, in exec_module File "<frozen importlib._bootstrap>", line 228, in _call_with_frames_removed File "/usr/lib/python3/dist-packages/nanolyse/NanoLyse.py", line 4, in <module> import mappy as mp ImportError: /usr/lib/python3/dist-packages/mappy.cpython-39-i386-linux-gnu.so: undefined symbol: ksw_extz2_sse autopkgtest [13:09:50]: test run-unit-test
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