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Bug#968573: wham-align: autopkgtest arm64 failure: times out after ./sequences:,chr1_100k.fa,Test 1



Source: wham-align
Version: 0.1.5-3.1
X-Debbugs-CC: debian-ci@lists.debian.org
Severity: serious
User: debian-ci@lists.debian.org
Usertags: fails-always timesout

Dear maintainer(s),

Your package wham-align has an autopkgtest, great. However, it fails on
arm64 because it times out. I copied some of the output at the bottom of
this report.

Paul

https://ci.debian.net/data/autopkgtest/testing/arm64/w/wham-align/6682709/log.gz

autopkgtest [11:12:08]: test run-unit-test: [-----------------------
.:
reads
ref
sequences

./reads:
sample.fq
sample_pair_1.fq
sample_pair_2.fq

./ref:
README.test_data
output1
output2
output3
output4
output5
output6
output7

./sequences:
chr1_100k.fa
Test 1
autopkgtest [13:58:48]: ERROR: timed out on command "su -s /bin/bash
debci -c set -e; export USER=`id -nu`; . /etc/profile >/dev/null 2>&1 ||
true;  . ~/.profile >/dev/null 2>&1 || true;
buildtree="/tmp/autopkgtest-lxc.n87033z5/downtmp/build.wq5/src"; mkdir
-p -m 1777 --
"/tmp/autopkgtest-lxc.n87033z5/downtmp/run-unit-test-artifacts"; export
AUTOPKGTEST_ARTIFACTS="/tmp/autopkgtest-lxc.n87033z5/downtmp/run-unit-test-artifacts";
export ADT_ARTIFACTS="$AUTOPKGTEST_ARTIFACTS"; mkdir -p -m 755
"/tmp/autopkgtest-lxc.n87033z5/downtmp/autopkgtest_tmp"; export
AUTOPKGTEST_TMP="/tmp/autopkgtest-lxc.n87033z5/downtmp/autopkgtest_tmp";
export ADTTMP="$AUTOPKGTEST_TMP"; export DEBIAN_FRONTEND=noninteractive;
export LANG=C.UTF-8; export DEB_BUILD_OPTIONS=parallel=4; unset LANGUAGE
LC_CTYPE LC_NUMERIC LC_TIME LC_COLLATE   LC_MONETARY LC_MESSAGES
LC_PAPER LC_NAME LC_ADDRESS   LC_TELEPHONE LC_MEASUREMENT
LC_IDENTIFICATION LC_ALL;rm -f /tmp/autopkgtest_script_pid; set -C; echo
$$ > /tmp/autopkgtest_script_pid; set +C; trap "rm -f
/tmp/autopkgtest_script_pid" EXIT INT QUIT PIPE; cd "$buildtree"; chmod
+x
/tmp/autopkgtest-lxc.n87033z5/downtmp/build.wq5/src/debian/tests/run-unit-test;
touch /tmp/autopkgtest-lxc.n87033z5/downtmp/run-unit-test-stdout
/tmp/autopkgtest-lxc.n87033z5/downtmp/run-unit-test-stderr;
/tmp/autopkgtest-lxc.n87033z5/downtmp/build.wq5/src/debian/tests/run-unit-test
2> >(tee -a /tmp/autopkgtest-lxc.n87033z5/downtmp/run-unit-test-stderr
>&2) > >(tee -a
/tmp/autopkgtest-lxc.n87033z5/downtmp/run-unit-test-stdout);" (kind: test)
autopkgtest [13:58:48]: test run-unit-test: -----------------------]

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