Source: deepnano Version: 0.0+git20170813.e8a621e-2 Severity: important X-Debbugs-CC: debian-ci@lists.debian.org User: debian-ci@lists.debian.org Usertags: timeout fails-always Dear maintainers, Since 2019-01-11 your package has failed its autopkgtest on the ci.debian.net infrastructure (both testing and unstable) due to timeouts of autopkgtest (after 10000 seconds). In the past, your test failed in about 1 minute. Could you please investigate and make your autopkgtest more robust against this time out? Please contact me if you need help and you think I can provide that (I am not subscribed to this bug). For now, I have blacklisted deepnano on our infrastructure, I'll remove it when this bug is closed. Paul https://ci.debian.net/data/autopkgtest/testing/amd64/d/deepnano/1834069/log.gz autopkgtest [15:24:56]: test run-test.sh: [----------------------- #1 - deepnano_basecall /usr/lib/python2.7/dist-packages/theano/configdefaults.py:560: UserWarning: DeprecationWarning: there is no c++ compiler.This is deprecated and with Theano 0.11 a c++ compiler will be mandatory warnings.warn("DeprecationWarning: there is no c++ compiler." WARNING (theano.configdefaults): g++ not detected ! Theano will be unable to execute optimized C-implementations (for both CPU and GPU) and will default to Python implementations. Performance will be severely degraded. To remove this warning, set Theano flags cxx to an empty string. WARNING (theano.tensor.blas): Using NumPy C-API based implementation for BLAS functions. loading template net done loading complement net done loading 2D net done calling read 0/69 test_data/2016_3_4_3507_1_ch120_read240_strand.fast5 calling read 1/69 test_data/2016_3_4_3507_1_ch120_read353_strand.fast5 calling read 2/69 test_data/2016_3_4_3507_1_ch120_read415_strand.fast5 calling read 3/69 test_data/2016_3_4_3507_1_ch120_read418_strand.fast5 calling read 4/69 test_data/2016_3_4_3507_1_ch120_read433_strand.fast5 calling read 5/69 test_data/2016_3_4_3507_1_ch120_read443_strand.fast5 calling read 6/69 test_data/2016_3_4_3507_1_ch120_read505_strand.fast5 calling read 7/69 test_data/2016_3_4_3507_1_ch120_read521_strand.fast5 calling read 8/69 test_data/2016_3_4_3507_1_ch120_read542_strand.fast5 calling read 9/69 test_data/2016_3_4_3507_1_ch120_read586_strand.fast5 calling read 10/69 test_data/2016_3_4_3507_1_ch120_read635_strand.fast5 calling read 11/69 test_data/2016_3_4_3507_1_ch120_read706_strand.fast5 calling read 12/69 test_data/2016_3_4_3507_1_ch120_read83_strand.fast5 calling read 13/69 test_data/2016_3_4_3507_1_ch120_read89_strand.fast5 calling read 14/69 test_data/2016_3_4_3507_1_ch126_read1066_strand.fast5autopkgtest [18:11:36]: ERROR: timed out on command "su -s /bin/bash debci -c set -e; export USER=`id -nu`; . /etc/profile >/dev/null 2>&1 || true; . ~/.profile >/dev/null 2>&1 || true; buildtree="/tmp/autopkgtest-lxc.fc9prhyw/downtmp/build.lqo/src"; mkdir -p -m 1777 -- "/tmp/autopkgtest-lxc.fc9prhyw/downtmp/run-test.sh-artifacts"; export AUTOPKGTEST_ARTIFACTS="/tmp/autopkgtest-lxc.fc9prhyw/downtmp/run-test.sh-artifacts"; export ADT_ARTIFACTS="$AUTOPKGTEST_ARTIFACTS"; mkdir -p -m 755 "/tmp/autopkgtest-lxc.fc9prhyw/downtmp/autopkgtest_tmp"; export AUTOPKGTEST_TMP="/tmp/autopkgtest-lxc.fc9prhyw/downtmp/autopkgtest_tmp"; export ADTTMP="$AUTOPKGTEST_TMP"; export DEBIAN_FRONTEND=noninteractive; export LANG=C.UTF-8; export DEB_BUILD_OPTIONS=parallel=2; unset LANGUAGE LC_CTYPE LC_NUMERIC LC_TIME LC_COLLATE LC_MONETARY LC_MESSAGES LC_PAPER LC_NAME LC_ADDRESS LC_TELEPHONE LC_MEASUREMENT LC_IDENTIFICATION LC_ALL;rm -f /tmp/autopkgtest_script_pid; set -C; echo $$ > /tmp/autopkgtest_script_pid; set +C; trap "rm -f /tmp/autopkgtest_script_pid" EXIT INT QUIT PIPE; cd "$buildtree"; chmod +x /tmp/autopkgtest-lxc.fc9prhyw/downtmp/build.lqo/src/debian/tests/run-test.sh; touch /tmp/autopkgtest-lxc.fc9prhyw/downtmp/run-test.sh-stdout /tmp/autopkgtest-lxc.fc9prhyw/downtmp/run-test.sh-stderr; /tmp/autopkgtest-lxc.fc9prhyw/downtmp/build.lqo/src/debian/tests/run-test.sh 2> >(tee -a /tmp/autopkgtest-lxc.fc9prhyw/downtmp/run-test.sh-stderr >&2) > >(tee -a /tmp/autopkgtest-lxc.fc9prhyw/downtmp/run-test.sh-stdout);" (kind: test) autopkgtest [18:11:37]: test run-test.sh: -----------------------] run-test.sh FAIL timed out
Attachment:
signature.asc
Description: OpenPGP digital signature