Source: scikit-learn, astroml Control: found -1 scikit-learn/0.20.0+dfsg-1 Control: found -1 astroml/0.3-7 X-Debbugs-CC: debian-ci@lists.debian.org User: debian-ci@lists.debian.org Usertags: breaks needs-update Dear maintainers, With a recent upload of scikit-learn the autopkgtest of astroml fails in testing when that autopkgtest is run with the binary packages of scikit-learn from unstable. It passes when run with only packages from testing. In tabular form: pass fail scikit-learn from testing 0.20.0+dfsg-1 astroml from testing 0.3-7 all others from testing from testing I copied some of the output at the bottom of this report. Currently this regression is contributing to the delay of the migration of scikit-learn to testing [1]. Due to the nature of this issue, I filed this bug report against both packages. Can you please investigate the situation and reassign the bug to the right package? If needed, please change the bug's severity. More information about this bug and the reason for filing it can be found on https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation Paul [1] https://qa.debian.org/excuses.php?package=scikit-learn https://ci.debian.net/data/autopkgtest/testing/amd64/a/astroml/1196880/log.gz autopkgtest [04:37:20]: test command2: [----------------------- /usr/lib/python3/dist-packages/astroML/time_series/periodogram.py:8: UserWarning: Using slow version of lomb_scargle. Install astroML_addons to use an optimized version warnings.warn("Using slow version of lomb_scargle. Install astroML_addons " EEEE/usr/lib/python3/dist-packages/astroML/dimensionality/iterative_pca.py:136: RuntimeWarning: invalid value encountered in true_divide ratio_i = X[i][notM[i]] / X_recons[i][notM[i]] .E../usr/lib/python3/dist-packages/astroML/stats/_binned_statistic.py:323: RuntimeWarning: invalid value encountered in true_divide result[a] /= flatcount /usr/lib/python3/dist-packages/numpy/core/fromnumeric.py:2957: RuntimeWarning: Mean of empty slice. out=out, **kwargs) /usr/lib/python3/dist-packages/numpy/core/_methods.py:80: RuntimeWarning: invalid value encountered in double_scalars ret = ret.dtype.type(ret / rcount) .......................................................................................................................................................................................... ====================================================================== ERROR: Failure: ImportError (cannot import name 'GMM') ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python3/dist-packages/nose/failure.py", line 39, in runTest raise self.exc_val.with_traceback(self.tb) File "/usr/lib/python3/dist-packages/nose/loader.py", line 417, in loadTestsFromName addr.filename, addr.module) File "/usr/lib/python3/dist-packages/nose/importer.py", line 47, in importFromPath return self.importFromDir(dir_path, fqname) File "/usr/lib/python3/dist-packages/nose/importer.py", line 94, in importFromDir mod = load_module(part_fqname, fh, filename, desc) File "/usr/lib/python3.6/imp.py", line 245, in load_module return load_package(name, filename) File "/usr/lib/python3.6/imp.py", line 217, in load_package return _load(spec) File "<frozen importlib._bootstrap>", line 684, in _load File "<frozen importlib._bootstrap>", line 665, in _load_unlocked File "<frozen importlib._bootstrap_external>", line 678, in exec_module File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed File "/usr/lib/python3/dist-packages/astroML/classification/__init__.py", line 1, in <module> from .gmm_bayes import GMMBayes File "/usr/lib/python3/dist-packages/astroML/classification/gmm_bayes.py", line 8, in <module> from sklearn.mixture import GMM ImportError: cannot import name 'GMM' ====================================================================== ERROR: Failure: ImportError (cannot import name 'GMM') ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python3/dist-packages/nose/failure.py", line 39, in runTest raise self.exc_val.with_traceback(self.tb) File "/usr/lib/python3/dist-packages/nose/loader.py", line 417, in loadTestsFromName addr.filename, addr.module) File "/usr/lib/python3/dist-packages/nose/importer.py", line 47, in importFromPath return self.importFromDir(dir_path, fqname) File "/usr/lib/python3/dist-packages/nose/importer.py", line 94, in importFromDir mod = load_module(part_fqname, fh, filename, desc) File "/usr/lib/python3.6/imp.py", line 245, in load_module return load_package(name, filename) File "/usr/lib/python3.6/imp.py", line 217, in load_package return _load(spec) File "<frozen importlib._bootstrap>", line 684, in _load File "<frozen importlib._bootstrap>", line 665, in _load_unlocked File "<frozen importlib._bootstrap_external>", line 678, in exec_module File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed File "/usr/lib/python3/dist-packages/astroML/clustering/__init__.py", line 1, in <module> from .mst_clustering import HierarchicalClustering, get_graph_segments File "/usr/lib/python3/dist-packages/astroML/clustering/mst_clustering.py", line 8, in <module> from sklearn.mixture import GMM ImportError: cannot import name 'GMM' ====================================================================== ERROR: Failure: ImportError (cannot import name 'GMM') ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python3/dist-packages/nose/failure.py", line 39, in runTest raise self.exc_val.with_traceback(self.tb) File "/usr/lib/python3/dist-packages/nose/loader.py", line 417, in loadTestsFromName addr.filename, addr.module) File "/usr/lib/python3/dist-packages/nose/importer.py", line 47, in importFromPath return self.importFromDir(dir_path, fqname) File "/usr/lib/python3/dist-packages/nose/importer.py", line 94, in importFromDir mod = load_module(part_fqname, fh, filename, desc) File "/usr/lib/python3.6/imp.py", line 245, in load_module return load_package(name, filename) File "/usr/lib/python3.6/imp.py", line 217, in load_package return _load(spec) File "<frozen importlib._bootstrap>", line 684, in _load File "<frozen importlib._bootstrap>", line 665, in _load_unlocked File "<frozen importlib._bootstrap_external>", line 678, in exec_module File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed File "/usr/lib/python3/dist-packages/astroML/datasets/__init__.py", line 21, in <module> from .generated import generate_mu_z File "/usr/lib/python3/dist-packages/astroML/datasets/generated.py", line 3, in <module> from ..density_estimation import FunctionDistribution File "/usr/lib/python3/dist-packages/astroML/density_estimation/__init__.py", line 2, in <module> from .xdeconv import XDGMM File "/usr/lib/python3/dist-packages/astroML/density_estimation/xdeconv.py", line 17, in <module> from sklearn.mixture import GMM ImportError: cannot import name 'GMM' ====================================================================== ERROR: Failure: ImportError (cannot import name 'GMM') ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python3/dist-packages/nose/failure.py", line 39, in runTest raise self.exc_val.with_traceback(self.tb) File "/usr/lib/python3/dist-packages/nose/loader.py", line 417, in loadTestsFromName addr.filename, addr.module) File "/usr/lib/python3/dist-packages/nose/importer.py", line 47, in importFromPath return self.importFromDir(dir_path, fqname) File "/usr/lib/python3/dist-packages/nose/importer.py", line 94, in importFromDir mod = load_module(part_fqname, fh, filename, desc) File "/usr/lib/python3.6/imp.py", line 245, in load_module return load_package(name, filename) File "/usr/lib/python3.6/imp.py", line 217, in load_package return _load(spec) File "<frozen importlib._bootstrap>", line 684, in _load File "<frozen importlib._bootstrap>", line 665, in _load_unlocked File "<frozen importlib._bootstrap_external>", line 678, in exec_module File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed File "/usr/lib/python3/dist-packages/astroML/density_estimation/__init__.py", line 2, in <module> from .xdeconv import XDGMM File "/usr/lib/python3/dist-packages/astroML/density_estimation/xdeconv.py", line 17, in <module> from sklearn.mixture import GMM ImportError: cannot import name 'GMM' ====================================================================== ERROR: Failure: ImportError (cannot import name 'GMM') ---------------------------------------------------------------------- Traceback (most recent call last): File "/usr/lib/python3/dist-packages/nose/failure.py", line 39, in runTest raise self.exc_val.with_traceback(self.tb) File "/usr/lib/python3/dist-packages/nose/loader.py", line 417, in loadTestsFromName addr.filename, addr.module) File "/usr/lib/python3/dist-packages/nose/importer.py", line 47, in importFromPath return self.importFromDir(dir_path, fqname) File "/usr/lib/python3/dist-packages/nose/importer.py", line 94, in importFromDir mod = load_module(part_fqname, fh, filename, desc) File "/usr/lib/python3.6/imp.py", line 245, in load_module return load_package(name, filename) File "/usr/lib/python3.6/imp.py", line 217, in load_package return _load(spec) File "<frozen importlib._bootstrap>", line 684, in _load File "<frozen importlib._bootstrap>", line 665, in _load_unlocked File "<frozen importlib._bootstrap_external>", line 678, in exec_module File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed File "/usr/lib/python3/dist-packages/astroML/plotting/__init__.py", line 1, in <module> from .hist_tools import hist File "/usr/lib/python3/dist-packages/astroML/plotting/hist_tools.py", line 5, in <module> from astroML.density_estimation import\ File "/usr/lib/python3/dist-packages/astroML/density_estimation/__init__.py", line 2, in <module> from .xdeconv import XDGMM File "/usr/lib/python3/dist-packages/astroML/density_estimation/xdeconv.py", line 17, in <module> from sklearn.mixture import GMM ImportError: cannot import name 'GMM' ---------------------------------------------------------------------- Ran 194 tests in 0.880s FAILED (errors=5) autopkgtest [04:37:23]: test command2: -----------------------]
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