Source: openmpi
Version: 3.1.2-5
X-Debbugs-CC: debian-ci@lists.debian.org
User: debian-ci@lists.debian.org
Usertags: breaks
Control: affects -1 src:lammps src:liggghts
Dear maintainers, Alastair,
With a recent upload of openmpi the autopkgtests of lammps and liggghts
fail in testing when that autopkgtest is run with the binary packages of
openmpi from unstable. It passes when run with only packages from
testing. In tabular form:
pass fail
openmpi from testing 3.1.2-5
lammps from testing 0~20180822.gitb47e49223+dfsg1-2
all others from testing from testing
and
pass fail
openmpi from testing 3.1.2-5
liggghts from testing 3.7.0+repack1-1
all others from testing from testing
I copied some of the output at the bottom of this report.
Currently this regression is contributing to the delay of the migration
of openmpi to testing [1]. Can you please investigate the situation and
reassign the bug to the right package? If needed, please change the
bug's severity.
More information about this bug and the reason for filing it can be found on
https://wiki.debian.org/ContinuousIntegration/RegressionEmailInformation
Paul
[1] https://qa.debian.org/excuses.php?package=openmpi
https://ci.debian.net/data/autopkgtest/testing/amd64/l/lammps/1091954/log.gz
Per MPI rank memory allocation (min/avg/max) = 2.749 | 2.749 | 2.749 Mbytes
Step Temp KinEng E_pair TotEng Pzz v_tau Lz f_myhug v_dele v_us v_up
0 0.01 0.014985 -6.3344257 -6.3194407
0.014355674 -0.00025875943 9.8684199 0 -0.0048551501
2.3793166 0.0041072351
[ci-1538630373:04734] *** Process received signal ***
[ci-1538630373:04734] Signal: Segmentation fault (11)
[ci-1538630373:04734] Signal code: Address not mapped (1)
[ci-1538630373:04734] Failing at address: (nil)
[ci-1538630373:04734] [ 0]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x128e0)[0x7feca9c008e0]
[ci-1538630373:04734] *** End of error message ***
-------------------------------------------------------
Primary job terminated normally, but 1 process returned
a non-zero exit code. Per user-direction, the job has been aborted.
-------------------------------------------------------
https://ci.debian.net/data/autopkgtest/testing/amd64/l/liggghts/1087822/log.gz
The radius grow rate is 1.00026291903569
Setting up run at Wed Oct 3 17:34:23 2018
Memory usage per processor = 8.75019 Mbytes
Step Atoms KinEng 1 Volume
1 338 0 0 0.0015
1000 338 8.1538788e-07 5.9242446e-09 0.0015
2000 338 1.6465292e-06 8.4119439e-09 0.0015
[ci-1538587997:03698] *** Process received signal ***
[ci-1538587997:03698] Signal: Segmentation fault (11)
[ci-1538587997:03698] Signal code: Address not mapped (1)
[ci-1538587997:03698] Failing at address: (nil)
[ci-1538587997:03698] [ 0]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x128e0)[0x7f4130e008e0]
[ci-1538587997:03698] *** End of error message ***
-------------------------------------------------------
Primary job terminated normally, but 1 process returned
a non-zero exit code. Per user-direction, the job has been aborted.
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