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Re: [GsoC] your latest commit of tasks_udd.py

Hi Akshita,

On Wed, Aug 05, 2015 at 03:17:09PM +0530, Akshita Jha wrote:
> > Hmmm, I can not see the citations for the example package express.
> >
> I have added the citations in the tasks files.

Looks good - actually even better than before:

@@ -1068,7 +1062,7 @@
 <data> : <end_tag> : ul
 <end_tag> : span
 <data> : <end_tag> : span
-<data> : <start_tag> : div <attr> : ('class', 'published') <data> : Please cite: <start_tag> : span <attr> : ('class', 'authors') <data> : Bastien Chevreux, Thomas Pfisterer, Bernd Drescher, Albert J.         Driesel, Werner E. G. M&#252;ller, Thomas Wetter and S&#225;ndor Suhai: <end_tag> : span
+<data> : <start_tag> : div <attr> : ('class', 'published') <data> : Please cite: <start_tag> : span <attr> : ('class', 'authors') <data> : Bastien Chevreux, Thomas Pfisterer, Bernd Drescher, Albert J.         Driesel, Werner E. G. Müller, Thomas Wetter and Sándor Suhai: <end_tag> : span
 <data> : <start_tag> : span <data> : <start_tag> : span <data> : <start_tag> : span <data> : <start_tag> : span <attr> : ('class', 'title') <start_tag> : a <attr> : ('href', 'http://genome.cshlp.org/content/  14/6/1147.abstract') <data> : Using the miraEST Assembler for Reliable and Automated mRNA Transcript Assembly and SNP Detection in Sequenced ESTs. <end_tag> : a
 <end_tag> : span
 <data> : <end_tag> : span


The new version now has 'ü' instead of '&#252'; and 'á' instead of
'&#225;'.  The result in the browser is the same but it looks better
when reading the code.  I wonder whether it makes sense to strip those
diffs from the test code by simply droping in class 'published' all
non-ASCII signs in the new code and all "&#[0-9];" in the old code.  It
might be a bit dangerous to overlook a real diff but as far as I can see
currently it simply spoils the diff.

Another real difference I found is

@@ -1686,8 +1680,6 @@
 <data> : <start_tag> : tr <data> : <start_tag> : td <attr> : ('colspan', '2') <attr> : ('class', 'project-description') <start_tag> : span <data> : <start_tag> : span <start_tag> : p <data> : Samtools is a    set of utilities that manipulate nucleotide sequence alignments in the binary BAM format. It imports from and exports to the ascii SAM (Sequence Alignment/Map) format, does sorting, merging and indexing, and   allows to retrieve reads in any regions swiftly. It is designed to work on a stream, and is able to open a BAM (not SAM) file on a remote FTP or HTTP server. <end_tag> : p
 <end_tag> : span
 <data> : <end_tag> : span
-<data> : <start_tag> : div <attr> : ('class', 'enhanced-by') <data> : The package is enhanced by the following packages: <start_tag> : a <attr> : ('href', 'http://packages.debian.org/search?keywords=libbio-   samtools-perl&searchon=names&exact=1&suite=all§ion=all') <data> : libbio-samtools-perl <end_tag> : a
-<data> : <end_tag> : div
 <data> : <start_tag> : div <attr> : ('class', 'published') <data> : Please cite: <start_tag> : span <attr> : ('class', 'authors') <data> : Heng Li, Bob Handsaker, Alec Wysoker, Tim Fennell, Jue Ruan, Nils     Homer, Gabor Marth, Goncalo Abecasis, Richard Durbin and 1000 Genome Project Data Processing Subgroup: <end_tag> : span
 <data> : <start_tag> : span <data> : <start_tag> : span <data> : <start_tag> : span <data> : <start_tag> : span <attr> : ('class', 'title') <start_tag> : a <attr> : ('href', 'http://bioinformatics.            oxfordjournals.org/cgi/content/abstract/btp352v1') <data> : The Sequence Alignment/Map (SAM) Format and SAMtools. <end_tag> : a
 <end_tag> : span

Could you please implement the

   The package is enhanced by the following packages

field.

Kind regards and thanks for your work

      Andreas.


-- 
http://fam-tille.de
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