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Bug#851466: marked as done (nmu: bzip2_1.0.6-8)

Your message dated Fri, 20 Jan 2017 00:23:56 +0100
with message-id <f81b9f52-2d53-7d90-34a4-ee84ad894285@debian.org>
and subject line Re: Bug#851466: khmer: autopkgtest is failing
has caused the Debian Bug report #851466,
regarding nmu: bzip2_1.0.6-8
to be marked as done.

This means that you claim that the problem has been dealt with.
If this is not the case it is now your responsibility to reopen the
Bug report if necessary, and/or fix the problem forthwith.

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-- 
851466: http://bugs.debian.org/cgi-bin/bugreport.cgi?bug=851466
Debian Bug Tracking System
Contact owner@bugs.debian.org with problems
--- Begin Message --- 
Package: khmer
Severity: normal

Hi,

the autopkgtest of khmer is failing[1] with

...
+ c++ -o test-prog-static -std=c++11 /usr/share/doc/khmer-common/test-compile.cc /usr/lib/x86_64-linux-gnu/liboxli.a /usr/lib/x86_64-linux-gnu/libz.a /usr/lib/x86_64-linux-gnu/libbz2.a
/usr/bin/ld: /usr/lib/x86_64-linux-gnu/libbz2.a(bzlib.o): relocation R_X86_64_32S against symbol `BZ2_crc32Table' can not be used when making a shared object; recompile with -fPIC
/usr/bin/ld: /usr/lib/x86_64-linux-gnu/libbz2.a(compress.o): relocation R_X86_64_32 against `.rodata.str1.8' can not be used when making a shared object; recompile with -fPIC
/usr/bin/ld: /usr/lib/x86_64-linux-gnu/libbz2.a(decompress.o): relocation R_X86_64_32S against `.rodata' can not be used when making a shared object; recompile with -fPIC
/usr/bin/ld: /usr/lib/x86_64-linux-gnu/libbz2.a(blocksort.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a shared object; recompile with -fPIC
/usr/bin/ld: final link failed: Nonrepresentable section on output
collect2: error: ld returned 1 exit status
...

The solution probably would be to fix the makefile to include -fPIC.

Kind regards

       Andreas.

[1] https://ci.debian.net/data/packages/unstable/amd64/k/khmer/20170112_131441.autopkgtest.log.gz

-- System Information:
Debian Release: 8.6
  APT prefers stable-updates
  APT policy: (500, 'stable-updates'), (500, 'stable')
Architecture: amd64 (x86_64)

Kernel: Linux 3.16.0-4-amd64 (SMP w/1 CPU core)
Locale: LANG=de_DE.UTF-8, LC_CTYPE=de_DE.UTF-8 (charmap=UTF-8)
Shell: /bin/sh linked to /bin/dash
Init: systemd (via /run/systemd/system)

--- End Message ---
--- Begin Message --- 
user release.debian.org@packages.debian.org
usertag 851466 + binnmu
thanks

On 19/01/17 09:08, Adrian Bunk wrote:
> Control: reassign -1 release.debian.org
> Control: retitle -1 nmu: bzip2_1.0.6-8
> 
> On Sun, Jan 15, 2017 at 10:29:25AM +0100, Andreas Tille wrote:
>> Package: khmer
>> Severity: normal
>>
>> Hi,
>>
>> the autopkgtest of khmer is failing[1] with
>>
>> ...
>> + c++ -o test-prog-static -std=c++11 /usr/share/doc/khmer-common/test-compile.cc /usr/lib/x86_64-linux-gnu/liboxli.a /usr/lib/x86_64-linux-gnu/libz.a /usr/lib/x86_64-linux-gnu/libbz2.a
>> /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libbz2.a(bzlib.o): relocation R_X86_64_32S against symbol `BZ2_crc32Table' can not be used when making a shared object; recompile with -fPIC
>> /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libbz2.a(compress.o): relocation R_X86_64_32 against `.rodata.str1.8' can not be used when making a shared object; recompile with -fPIC
>> /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libbz2.a(decompress.o): relocation R_X86_64_32S against `.rodata' can not be used when making a shared object; recompile with -fPIC
>> /usr/bin/ld: /usr/lib/x86_64-linux-gnu/libbz2.a(blocksort.o): relocation R_X86_64_32 against `.rodata.str1.1' can not be used when making a shared object; recompile with -fPIC
>> /usr/bin/ld: final link failed: Nonrepresentable section on output
>> collect2: error: ld returned 1 exit status
>> ...
>>
>> The solution probably would be to fix the makefile to include -fPIC.
> 
> What is required is a binNMU of bzip2 with PIE:
> 
>   nmu bzip2_1.0.6-8 . ANY . -m "Rebuild static library with PIE"

Scheduled.

Emilio

--- End Message ---
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