Re: OpenClinica in Debian-Med
On Monday, October 31, 2011 01:59:44 PM Sebastian Hilbert wrote:
I have done some more research on which jar files are needed by OpenClinica
Here is a (maybe incomplete list)
There are a few occurences where no package in Debian provides the jar.
However for all jars sources exist and their is a license which should comply
with Debian guidelines (see below)
Please advise.
activation-1.0.2.jar - libgnujaf-java in sid
antlr-2.7.6.jar - antlr in sid
aopalliance-1.0.jar - libaopalliance-java in sid
aspectjrt-1.6.8.jar - libaspectj-java in sid
aspectjweaver-1.6.8.jar - libaspectj-java in sid
avalon-framework-api-4.3.1.jar - libavalon-framework-java in sid
avalon-framework-impl-4.3.1.jar - libavalon-framework-java in sid
batik-anim-1.7.jar - libbatik-java in sid
batik-awt-util-1.7.jar - libbatik-java in sid
batik-bridge-1.7.jar - libbatik-java in sid
batik-css-1.7.jar - libbatik-java in sid
batik-dom-1.7.jar - libbatik-java in sid
batik-ext-1.7.jar - libbatik-java in sid
batik-extension-1.7.jar - libbatik-java in sid
batik-gvt-1.7.jar - libbatik-java in sid
batik-parser-1.7.jar - libbatik-java in sid
batik-script-1.7.jar - libbatik-java in sid
batik-svg-dom-1.7.jar - libbatik-java in sid
batik-svggen-1.7.jar - libbatik-java in sid
batik-transcoder-1.7.jar - libbatik-java in sid
batik-util-1.7.jar - libbatik-java in sid
batik-xml-1.7.jar - libbatik-java in sid
bcmail-jdk14-138.jar - libcmail-java in sid
bcprov-jdk14-138.jar - libcprov-java in sid
castor-1.2.jar - ?? not in debian - www.castor.org - Apache-2.0-style license
castor-core-1.3.1.jar - libcastor-core-java in sid
castor-xml-1.3.1.jar - libcastor-core-xml in sid
cglib-nodep-2.1_3.jar - libcglib2.1-java in sid
commons-beanutils-1.8.0.jar - libcommons-beantutils-java in sid
commons-codec-1.3.jar - libcommons-codec-java in sid
commons-collections-3.2.1.jar - libcommons-collections-java in sid
commons-dbcp-1.2.2.jar - libcommons-dhcp-java in sid
commons-digester-1.7.jar - libcommons-digester-java in sid
commons-discovery-0.2.jar - libcommons-dicovery-java in sid
commons-fileupload-1.2.1.jar - libcommons-fileupload-java in sid
commons-httpclient-3.0.1.jar - libcommons-httpclient-java in sid
commons-io-1.4.jar - libcommons-io-java in sid
commons-lang-2.3.jar - libcommons-lang-java in sid
commons-logging-1.0.4.jar - libcommons-logging-java in sid
commons-logging-api-1.0.4.jar - libcommons-logging-java in sid
commons-math-1.1.jar - libcommons-math-java in sid
commons-pool-1.3.jar - libcommons-pool-java in sid
commons-validator-1.3.1.jar - libcommons-validator-java in sid
dom4j-1.6.1.jar - libdom4j-java in sid
fop-1.0.jar - fop in sid
hibernate-annotations-3.5.1-Final.jar - libhibernate-annotations-java (3.6)
hibernate-commons-annotations-3.2.0.Final.jar - libhibernate-commons-
annotations-java
hibernate-core-3.5.1-Final.jar - libhibernate3-java (3.6)
hibernate-jpa-2.0-api-1.0.0.Final.jar - not in Debian (LGPL)
hibernate-validator-4.0.2.GA.jar - libhibernate-validator-java in sid
itext-2.1.2.jar - libitext-java in sid
jackson-core-asl-1.5.3.jar - libjackson-json-java in sid
jackson-mapper-asl-1.5.3.jar - libjackson-json-java in sid
janino-2.5.10.jar - janino in sid
javassist-3.8.0.GA.jar - libjavassist-java (3.12 sid) (3.8 lenny)
jaxb-api-2.1.jar - libjaxme-java in sid (jaxmeapi.jar) ? or included in
openjdk ? license: CDDL / GPLv2
jaxb-impl-2.1.3.jar - libjaxme-java in sid (jaxmeapi.jar) ? or included in
openjdk ? license: CDDL / GPLv2
jcl-over-slf4j-1.5.6.jar - libslj4j-java in sid
jdom-1.1.jar - libjdom1-java in sid
jmesa-2.4.2.jar - not in Debian - Apache 2 license
joda-time-1.6.jar - libjoda-time-java
jstl-1.1.2.jar - libjstl1.1-java
jta-1.1.jar - not in Debian either from Oracle (GPL) or libgeronimo-jta-1-1-
spec-java
jul-to-slf4j-1.5.6.jar - libslj4j-java in sid
jxl-2.6.6.jar - libjxcelapi-java in sid
liquibase-core-1.9.5.jar - not in Debian (Apache 2.0)
liquibase-plugin-1.9.5.0.jar - not in Debian (Apache 2.0)
log4j-1.2.14.jar - liblog4j1.2-java in sid
logback-access-0.9.20.jar - not in Debian (EPL v1.0 or LGPL 2.1)
logback-classic-0.9.20.jar - liblogback-java in sid
logback-core-0.9.20.jar - liblogback-java in sid
mail-1.4.jar - not in Debian (CDDL license)
ojdbc14-10g.jar - not in Debian - closed - some Oracle distribution license -
can skipped when using PG
OpenClinica-core-3.1.1-Community.jar - LPGL
openclinica-odm-0.1.0.BUILD-SNAPSHOT.jar - LGPL
oro-2.0.8.jar - liboro-java in sid
persistence-api-1.0.jar - not in Debian (Oracle CDDL) - shipped by glassfish-
javaee
pjl-comp-filter-1.6.4.jar - not in Debian (Apache 2.0)
poi-3.0.1-FINAL.jar - libapache-poi-java in sid
postgresql-8.1-404.jdbc3.jar - libpg-java in sid
quartz-1.8.0.jar - libquartz-java (1.7.3)
quartz-oracle-1.8.0.jar - not in Debian (not needed for PG)
rome-1.0.jar - librome-java in sid
rome-fetcher-1.0.jar - not in Debian (Apache 2)
saxon-8.7.jar - libsaxon-java in sid (6.5.5)
saxon-dom-8.7.jar - not in Debian (Mozilla Public license)
sitemesh-2.3.jar - libsitemesh-java in sid
slf4j-api-1.5.6.jar - libslj4j-java in sid
spring-aop-3.0.5.RELEASE.jar - libspring-aop-java in sid
spring-asm-3.0.5.RELEASE.jar - not in Debian
spring-aspects-3.0.5.RELEASE.jar - libspring-aspects-2.5-java !!
spring-beans-3.0.5.RELEASE.jar - libspring-beans-java in sid
spring-context-3.0.5.RELEASE.jar - libspring-context-java in sid
spring-context-support-3.0.5.RELEASE.jar - libspring-context-support-java
spring-core-3.0.5.RELEASE.jar - libspring-core-java in sid
spring-expression-3.0.5.RELEASE.jar - libspring-expression-java
spring-jdbc-3.0.5.RELEASE.jar - libspring-jdbc-java in sid
spring-orm-3.0.5.RELEASE.jar - libspring-orm-java in sid
spring-oxm-3.0.5.RELEASE.jar - libspring-oxm-java in sid
spring-security-acl-3.0.5.RELEASE.jar - libspring-security-acl-2.0-java !!
spring-security-config-3.0.5.RELEASE.jar - not in Debian (Apache 2.0 license)
spring-security-core-3.0.5.RELEASE.jar - not in Debian (Apache 2.0 license)
spring-security-oauth-1.0.0.M2.jar - not in Debian (Apache 2.0 license)
spring-security-taglibs-3.0.5.RELEASE.jar - libspring-security-taglibs-2.0-
java !!
spring-security-web-3.0.5.RELEASE.jar - not in Debian
spring-test-3.0.5.RELEASE.jar - libstring-test-jav in sid
spring-tx-3.0.5.RELEASE.jar - libspring-tx-2.5-java !!
spring-web-3.0.5.RELEASE.jar - libspring-web-java in sid
spring-webmvc-3.0.5.RELEASE.jar - libspring-webmvc-2.5-java
standard-1.1.2.jar - not in Debian (license ?)
stax-api-1.0-2.jar - libstax-java in sid
transaction-api-1.1.jar - not in Debian (GPL) - shipped by glassfish-javaee
validation-api-1.0.0.GA.jar - not in Debian (Apache 2)
xalan-2.6.0.jar - libxalan2-java in sid
xercesImpl-2.4.0.jar - libxerces2-java in sid
xml-apis-1.0.b2.jar - libjaxp1.3-java in sid
xml-apis-ext-1.3.04.jar - libxml-commons-external-java in sid
xmlgraphics-commons-1.4.jar - libxmlgraphics-commons-java
jars not availabe as Debian packages along with their licenses.
castor-1.2.jar - ?? not in debian - www.castor.org - Apache-2.0-style license
hibernate-jpa-2.0-api-1.0.0.Final.jar - not in Debian (LGPL)
jaxb-api-2.1.jar - libjaxme-java in sid (jaxmeapi.jar) ? or included in
openjdk ? license: CDDL / GPLv2
jaxb-impl-2.1.3.jar - libjaxme-java in sid (jaxmeapi.jar) ? or included in
openjdk ? license: CDDL / GPLv2
jmesa-2.4.2.jar - not in Debian - Apache 2 license
jta-1.1.jar - not in Debian either from Oracle (GPL) or libgeronimo-jta-1-1-
spec-java
liquibase-core-1.9.5.jar - not in Debian (Apache 2.0)
logback-access-0.9.20.jar - not in Debian (EPL v1.0 or LGPL 2.1)
mail-1.4.jar - not in Debian (CDDL license)
ojdbc14-10g.jar - not in Debian - closed - some Oracle distribution license -
can skipped when using PG
OpenClinica-core-3.1.1-Community.jar - LPGL
openclinica-odm-0.1.0.BUILD-SNAPSHOT.jar - LGPL
persistence-api-1.0.jar - not in Debian (Oracle CDDL) - shipped by glassfish-
javaee
pjl-comp-filter-1.6.4.jar - not in Debian (Apache 2.0)
pjl-comp-filter-1.6.4.jar - not in Debian (Apache 2.0)
quartz-oracle-1.8.0.jar - not in Debian (not needed for PG)
rome-fetcher-1.0.jar - not in Debian (Apache 2)
saxon-dom-8.7.jar - not in Debian (Mozilla Public license)
spring-asm-3.0.5.RELEASE.jar - not in Debian
spring-security-config-3.0.5.RELEASE.jar - not in Debian (Apache 2.0 license)
spring-security-core-3.0.5.RELEASE.jar - not in Debian (Apache 2.0 license)
spring-security-oauth-1.0.0.M2.jar - not in Debian (Apache 2.0 license)
standard-1.1.2.jar - not in Debian (license ?)
transaction-api-1.1.jar - not in Debian (GPL) - shipped by glassfish-javaee
validation-api-1.0.0.GA.jar - not in Debian (Apache 2)
Best regards,
Sebastian Hilbert
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