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Package: wnpp
Severity: wishlist
Subject: ITP: r-cran-bios2cor -- GNU R from Biological Sequences and Simulations to Correlation
Package: wnpp
Owner: Shayan Doust <hello@shayandoust.me>
Severity: wishlist
* Package name : r-cran-bios2cor
Version : 2.2
Upstream Author : Bruck Taddese,
* URL : https://cran.r-project.org/package=Bios2cor
* License : GPL-2+
Programming Lang: GNU R
Description : GNU R from Biological Sequences and Simulations to Correlation
Analysis Utilities for computation and analysis of
correlation/covariation in multiple sequence alignments and in
side chain motions during molecular dynamics simulations. Features
include the computation of correlation/covariation scores using a
variety of scoring functions between either sequence positions in
alignments or side chain dihedral angles in molecular dynamics
simulations and utilities to analyze the correlation/covariation
matrix through a variety of tools including network representation
and principal components analysis. In addition, several utility
functions are based on the R graphical environment to provide
friendly tools for help in data interpretation. Examples of
sequence covariation analysis are provided in: (1) Pele J, Moreau
M, Abdi H, Rodien P, Castel H, Chabbert M (2014)
<doi:10.1002/prot.24570> and (2) Taddese B, Deniaud M, Garnier A,
Tiss A, Guissouma H, Abdi H, Henrion D, Chabbert M (2018) <doi:
10.1371/journal.pcbi.1006209>. An example of side chain correlated
motion analysis is provided in: Taddese B, Garnier A, Abdi H,
Henrion D, Chabbert M (2020) <doi: 10.1038/s41598-020-72766-
1>. This work was supported by the French National Research
Agency (Grant number: ANR-11-BSV2-026) and by GENCI (Grant
number: 100567).
Remark: This package is maintained by Debian R Packages Maintainers at
https://salsa.debian.org/r-pkg-team/r-cran-bios2cor
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--- Begin Message ---
Source: r-cran-bios2cor
Source-Version: 2.2-1
Done: Shayan Doust <hello@shayandoust.me>
We believe that the bug you reported is fixed in the latest version of
r-cran-bios2cor, which is due to be installed in the Debian FTP archive.
A summary of the changes between this version and the previous one is
attached.
Thank you for reporting the bug, which will now be closed. If you
have further comments please address them to 972392@bugs.debian.org,
and the maintainer will reopen the bug report if appropriate.
Debian distribution maintenance software
pp.
Shayan Doust <hello@shayandoust.me> (supplier of updated r-cran-bios2cor package)
(This message was generated automatically at their request; if you
believe that there is a problem with it please contact the archive
administrators by mailing ftpmaster@ftp-master.debian.org)
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 1.8
Date: Wed, 14 Oct 2020 15:16:27 +0000
Source: r-cran-bios2cor
Binary: r-cran-bios2cor
Architecture: source all
Version: 2.2-1
Distribution: unstable
Urgency: medium
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Changed-By: Shayan Doust <hello@shayandoust.me>
Description:
r-cran-bios2cor - GNU R from Biological Sequences and Simulations to Correlation
Closes: 972392
Changes:
r-cran-bios2cor (2.2-1) unstable; urgency=medium
.
* Initial release (closes: #972392)
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